View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19858_low_18 (Length: 236)
Name: NF19858_low_18
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19858_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 971400 - 971200
Alignment:
| Q |
23 |
atagagtggaatgggatttcctagaaagcactcttctcactatggactttcctattaaaattgttaaaactataatgttgtgtgtcagaagtgtatcttt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
971400 |
atagagtggaatgggatttcctagaaagcactcttctcactatgggcttccctattaaaattgttaaaactataatgctgtgtgtcagaagtgtgtcttt |
971301 |
T |
|
| Q |
123 |
ttccattcttataaatgaatccccatctactatgtttaaacctaaaagggaaattagacaaggagatcctctgcccccttatcttttcataatctgtgct |
222 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
971300 |
ttccattcttataaatggatccccatctactatgtttaaacctaaaaggggaattagacaaggagatcctctctccccttatcttttcataatttgtgct |
971201 |
T |
|
| Q |
223 |
g |
223 |
Q |
| |
|
| |
|
|
| T |
971200 |
g |
971200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 43136421 - 43136247
Alignment:
| Q |
20 |
atgatagagtggaatgggatttcctagaaagcactcttctcactatggactttcctattaaaattgttaaaactataatgttgtgtgtcagaagtgtatc |
119 |
Q |
| |
|
|||| |||||||| |||||||| ||||| ||||| |||| |||| ||||||||||| |||| || ||||| || | |||||||||||||| || |
|
|
| T |
43136421 |
atgacagagtggagtgggattttttagaatcaactctcttcaccatgggttttcctattaatcttgtcaatactatcgtgctttgtgtcagaagtgtctc |
43136322 |
T |
|
| Q |
120 |
tttttccattcttataaatgaatccccatctactatgtttaaacctaaaagggaaattagacaaggagatcctct |
194 |
Q |
| |
|
|||||| ||||| || |||| ||| | ||||||| ||||||||||| || | ||||||||||||||| ||||| |
|
|
| T |
43136321 |
tttttctattctaattaatggatctcattctactacttttaaacctaagagaggaattagacaaggagaccctct |
43136247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University