View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19858_low_2 (Length: 668)
Name: NF19858_low_2
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19858_low_2 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 28 - 668
Target Start/End: Original strand, 31738799 - 31739435
Alignment:
| Q |
28 |
agcaacaacaacaataagcaaaattcaaaaacttgtggaatacccattaatccacaagcaattcacaacagacaacactgaaatcaacaacaacattaat |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
31738799 |
agcaacaacaacaataagcaaaattcaaaaacttgtggaatacccattaatccacaagcaattcacaatagacaacactgaaatcaacaacatcattaat |
31738898 |
T |
|
| Q |
128 |
ccacaattccacagctcaattatcatacacggatacatcaatttcaccatcacatatcacaatttcactattgtacagaagaattagaacaaaccactat |
227 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||||||||| |
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| T |
31738899 |
ccacatatccacagctcaattatcatacacggatacatcaattccaccatca-------caatttcaccgttgtacagaggaattagaacaaaccactat |
31738991 |
T |
|
| Q |
228 |
ttatcacaatctgcaattgacaacactaaaatcagcaacaacattaagcataactccacaaatcgcacatcaaaattttacataactatggttccaatcc |
327 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31738992 |
ttatcacaatctgcaattgacaacactaaaatcagcaacaacattaagcataactccacaaatcgcacatcaaaattttacataaatatggttccaatcc |
31739091 |
T |
|
| Q |
328 |
aaaaccagaattgaacaaaactcacaacaacattgccagattcaagcctcctagcatactcttcagcaacaatcatagcagcaacaccttttctctgaag |
427 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |
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| T |
31739092 |
aaaaccagaattgaacaaaactcgcaacaacattgccagattaaaacctcctagcatactcctcagcaacaatcataacagcaacacattttctctgaag |
31739191 |
T |
|
| Q |
428 |
agcatcacgcttagctttcatggatgcagattcatcaaccacatcaccacaaccaccaccgctaacaataacaatttca---ggcggcggcaccactttc |
524 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
31739192 |
agcatcacgcttagctttcatggatgcagattcatcaaccacatcaccataaccaccaccgctaacaacaacaatttcaggcggcggcggcaccactttc |
31739291 |
T |
|
| Q |
525 |
ggcaccgcaacttgaatcgttccaccatcttccttttgtgaatcaccgaggacggaagcggtgtagggttgacggcagcgatgacttctatttgggctct |
624 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
31739292 |
ggcaccgcaacttgaatcgttccaccatcttccttccgtgaatcaccgaggacggaaggggtgtagggttgacggcagcgatgacttcaatttgggctcc |
31739391 |
T |
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| Q |
625 |
ggtggcagtgttgtttccgtttggaatggaattcgtttccattg |
668 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31739392 |
agcggcagtgttgtttccgtttggaatggaattcgtttccattg |
31739435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 13 - 668
Target Start/End: Original strand, 19913911 - 19914568
Alignment:
| Q |
13 |
aatatcaacaactgtagcaacaacaacaataagcaaaattcaaaaacttgtggaatacccattaatccacaagcaattcacaacagacaacactgaaatc |
112 |
Q |
| |
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|||| ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19913911 |
aataacaacagctgcagcaacaacaataataagcaaaattcaaaaacttgtggaatacccattaatccacaagcaattcacaacagacaacactgaaatc |
19914010 |
T |
|
| Q |
113 |
aacaacaacattaatccacaattccacagctcaattatcatacacggatacatcaatttcaccatcacatatcacaatttcactattgtacagaagaatt |
212 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |
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| T |
19914011 |
aacaacaacattaatccacaactccacaactcaattatcatacacagatacatcaattccaccatcacatatcacaatttcaccgttgtatagaagaatt |
19914110 |
T |
|
| Q |
213 |
agaacaaaccactatttatcacaatctgcaattgacaacactaaaatcagcaacaacattaagcataactccacaaatcgcacatcaaaattttacataa |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19914111 |
agaacaaaccactatttatcacaatctgcaattgacaacactaaaatcagcaacaacattaagcataactccacaaatcgcacatcaaaattttacataa |
19914210 |
T |
|
| Q |
313 |
ctatggttccaatccaaaaccagaattgaacaaaactcacaacaacattgccagattcaagcctcctagcatactcttcagcaacaatcatagcagcaac |
412 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| |
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|
| T |
19914211 |
ttatggttctaatccaaaaccagaattaaacaaaactcagaacaacattgccagattcaagcctccttgcatactcctcagcaacaatcatagaagcaac |
19914310 |
T |
|
| Q |
413 |
accttttctctgaagagcatcacgcttagctttcatggatgcagattcatcaaccacatcaccacaaccaccaccgctaacaataacaatttcaggcggc |
512 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
19914311 |
acc-tttctatgaagagcatcacgcttagctttcatggatgcagattcattaaccacatcaccacaaccaccactgctaacaagaacaatttcaggcggc |
19914409 |
T |
|
| Q |
513 |
gg---caccactttcggcaccgcaacttgaatcgttccaccatcttccttttgtgaatcaccgaggacggaagcggtgtagggttgacggcagcgatgac |
609 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
19914410 |
ggtgacaccactttcggcaccgcaacttgaattgttccaccatcttccttccgtgaatcaccgaggacggaaggggtgtagagttgacggcagcgatgac |
19914509 |
T |
|
| Q |
610 |
ttctatttgggctctggtggcagtgttgtttccgtttggaatggaattcgtttccattg |
668 |
Q |
| |
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||| ||||| |||| | | ||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
19914510 |
ttcgatttgtgctccgacgacagtgttgtttccgtttggaatggaattcgttttcattg |
19914568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 6e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 85 - 574
Target Start/End: Complemental strand, 13938634 - 13938170
Alignment:
| Q |
85 |
gcaattcacaacagacaacactgaaatcaacaacaacattaatccacaattccacagctcaattatcatacacggatacatcaatttcaccatcacatat |
184 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||||| |||||||| | |||||||||||||| ||| |||| ||||||| ||| ||||| |||| || |
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|
| T |
13938634 |
gcaattcgcaactgacaaaactgaaatcaacaaca---ttaatccatgactccacagctcaattttcaaacacaaatacatctattccaccaacacacat |
13938538 |
T |
|
| Q |
185 |
cacaatttcactattgtacagaagaattagaacaaaccactatttatcacaatctgcaattgacaacactaaaatcagcaacaacattaagcataactcc |
284 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
13938537 |
cacaatttcaccattgcacagagaaattagaacaaactgcc--------------gcaattgacaacactaaaatcaacaacaacattaagcataactca |
13938452 |
T |
|
| Q |
285 |
acaaatcgcacatcaaaatttt-acataactatggttccaatccaaaaccagaattgaacaaaactcacaacaacattgccagattcaagcctcctagca |
383 |
Q |
| |
|
||||||| |||||||||| ||| ||| ||||| |||||||| |||| || ||||||| |||||||||||||||||||||| |
|
|
| T |
13938451 |
acaaatcacacatcaaaaatttcacaaaactagggttccaa---------------------aactaaccacaacatcgccagattcaagcctcctagca |
13938373 |
T |
|
| Q |
384 |
tactcttcagcaacaatcatagcagcaacaccttttctctgaagagcatcacgcttagctttcatggatgcagattcatcaaccacatca------ccac |
477 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
13938372 |
tactcctcagcagcaatcatagcagcagcaccttttctctgaagagcatcacgcttagctttcatggatgcagattcatcaaccacatcaccaccaccac |
13938273 |
T |
|
| Q |
478 |
aaccaccaccgctaacaataacaatttc------aggcggcggcaccactttcggcaccgcaacttgaatcgttccaccatcttccttttgtgaatcacc |
571 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13938272 |
caccaccaccgctaacagcaacaatttcctgcggcggcggtggcaccactttcggcaccgcaacttgaatcgttccaccatcttccttccgtgaatcacc |
13938173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 7e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 51726360 - 51726162
Alignment:
| Q |
30 |
caacaacaacaataagcaaaattcaaaaacttgtggaatacccattaatccacaagcaattcacaacagacaacactgaaatcaacaacaacattaatcc |
129 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
51726360 |
caacaagaacaacaagcaaaattcaaaaacttgtagaatacccattaaaccaaaagcaattcgcaacaaacaacactgaaatcaacaacaacaataatcc |
51726261 |
T |
|
| Q |
130 |
acaattccacagctcaattatcatacacggatacatcaatttcaccatcacatatcacaatttcactattgtacagaagaattagaacaaaccactatt |
228 |
Q |
| |
|
| | |||||| ||||||||||| |||| ||||||||| || ||| | |||||||||||||||||| ||| ||| | ||||||||||||||| ||||| |
|
|
| T |
51726260 |
atgactccacaactcaattatcaaacacagatacatcagttccactagcacatatcacaatttcaccgttgcacaaaggaattagaacaaaccgctatt |
51726162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 584 - 668
Target Start/End: Original strand, 52446805 - 52446889
Alignment:
| Q |
584 |
ggtgtagggttgacggcagcgatgacttctatttgggctctggtggcagtgttgtttccgtttggaatggaattcgtttccattg |
668 |
Q |
| |
|
||||||||||||||||| ||||| || | |||||||||| || ||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
52446805 |
ggtgtagggttgacggcggcgatagctccgatttgggctccggcggcagtgttgtttccgtttggaatggaatccatttccattg |
52446889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 7210602 - 7210566
Alignment:
| Q |
217 |
caaaccactatttatcacaatctgcaattgacaacac |
253 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7210602 |
caaaccactattttccacaatctgcaattgacaacac |
7210566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 3924164 - 3924118
Alignment:
| Q |
209 |
aattagaacaaaccactatttatcacaatctgcaattgacaacacta |
255 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
3924164 |
aattggaacaaaccactattttccacaatctgcaattgacaacacta |
3924118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 36074 - 36028
Alignment:
| Q |
209 |
aattagaacaaaccactatttatcacaatctgcaattgacaacacta |
255 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
36074 |
aattggaacaaaccgctattttccacaatctgcaattgacaacacta |
36028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 35849514 - 35849470
Alignment:
| Q |
208 |
gaattagaacaaaccactatttatcacaatctgcaattgacaaca |
252 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
35849514 |
gaatttgaacaaaccgctattttccacaatctgcaattgacaaca |
35849470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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