View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19858_low_3 (Length: 606)
Name: NF19858_low_3
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19858_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 198 - 604
Target Start/End: Complemental strand, 52445330 - 52444936
Alignment:
| Q |
198 |
aaaaaatcaatgattcatactcatacgtatatattaactcatccaaatattcatttgtgaatatgtgcctttcattgatgactaatggagcagtgcaaag |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52445330 |
aaaaaatcaatgattcatactcatacgtatatattaactcatccaaatattcatttgtgaatatgtgcctttcattgatgactaatggaacagtgcaaag |
52445231 |
T |
|
| Q |
298 |
tgaaatatatatatgacgcgtaactaccaagaatgttaacaatactagtggattacggacaaggacatgttgcttatttatctcacaagaatgatgtggt |
397 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
52445230 |
tgaaatatat----gacgcgtaactaccaagaatgttaacaatactagtggattacggacaaggacatgttgcttat----ctcacaagaatgatgtggt |
52445139 |
T |
|
| Q |
398 |
caaaatatatgatcgacaactagatagatttggtgtacatttgttggaggaaaaatgtcacaatgagacaaaataaagttattgacaattctgtataacc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52445138 |
caaaatatatgatcgacaactagatagatttggtgtacatttgttggatgaaaaatgttacaatgagacaaaataaagttattgacaattctgtataacc |
52445039 |
T |
|
| Q |
498 |
gtacgtaccgttgtgggagctggcttaagagaaattcttgcccttgttataactccaaattgtcctaaacctccaagaaccgcgtgatataactctgaat |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52445038 |
----gtaccgttgtgggagctggcttaagagaaattcttgcccttgttataactccaaattgtcctaaacctccaagaaccgcgtgatataactctgaat |
52444943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 52445452 - 52445372
Alignment:
| Q |
61 |
aaccttcaaaattagaatacaagattcgagtgttaatttcaagagtgatttttgaatatttatatttaaaaactcgcatat |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52445452 |
aaccttcaaaattagaatacaagattcgagtgttaatttcaagagtgatttttgaatatttatatttataaactcgcatat |
52445372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 17277293 - 17277232
Alignment:
| Q |
516 |
gctggcttaagagaaattcttgcccttgttataactccaaattgtcctaaacctccaagaac |
577 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
17277293 |
gctggctcaagagctattcttgcccttgttataattccaaattgtcctaatcctccaagaac |
17277232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University