View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19858_low_6 (Length: 517)
Name: NF19858_low_6
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19858_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 14 - 501
Target Start/End: Original strand, 47287295 - 47287782
Alignment:
| Q |
14 |
atatatatatacatgcatgtggaattggtggtaagtgtctttgaaaggagtgatggattcggcaactaaaggggcgattttgaaggaatgtagtttaagg |
113 |
Q |
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| T |
47287295 |
atatatatatacatgcatgtggaattggtggtaagtgtctttgaaaggagtgatggattcggcaactaaaggggcaattttgaaggaatgtagtttaagg |
47287394 |
T |
|
| Q |
114 |
ccaagaagtatgattcctactaatatgcgacaaatcttgaatatatgttcatgaaagactgagcaatggactcatgatacagttactaattactataatt |
213 |
Q |
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| T |
47287395 |
ccaagaagtatgattcctactaatatgcgacaaatcttgaatacatgttcatgaaagactgagcaatggactcatgatacagttactaattactataatt |
47287494 |
T |
|
| Q |
214 |
ggagtatcatatggtatagttctttggtagcagtatgacacgtttgccttttaaatttgtggcatcttttatgccaagtttaatttcagattgatcatgc |
313 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47287495 |
ggagtatcatatcgtatagttctttggtagcagtatgacacgtttgccttttaaatttgtggcatctttcatgccaagtttaatttcagattgatcatgc |
47287594 |
T |
|
| Q |
314 |
agtattttgtgtgtaattcaaaggagcctataataaacacatgttccaacaagagataagttgatctcacatagaacttaagctttgacaagaannnnnn |
413 |
Q |
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| T |
47287595 |
agtattttgtgtgtaattcaaaggagcctataataaacacaggttccaacaagagataagttgatctcacatagaacttaagctttgacaagaatttttt |
47287694 |
T |
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| Q |
414 |
nggccaaacaacttttcgtaaactcatatcaatttgaaattaatttaaaaaacttagttaggctacatcaagagtacatgtaagacgg |
501 |
Q |
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| T |
47287695 |
tggccaaacaacttttcgtaaactcatatcaatttgaaattaatttaaaaaacttagttaggctacatcaagagtacatgtaagacgg |
47287782 |
T |
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