View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19858_low_7 (Length: 500)
Name: NF19858_low_7
Description: NF19858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19858_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 5036776 - 5036309
Alignment:
| Q |
17 |
aactaccaccgtagtgaagctcagaaaaaggtcgagaccattattgttctagattggaccaaggcccatacgagttggacctctacgcctcaggtccaac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5036776 |
aactaccaccgtagtgaagctcagaaaaaggtcgagaccattattgttctagattggaccaaggcccatacgagttggacctctacgcctcaggtccaac |
5036677 |
T |
|
| Q |
117 |
tgtgcatggattcttctagagggtcatagcgacaatatgatttcaatcgacaataagttgtgtattacaatgaaatttacgtgtttgataatgttctcaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
5036676 |
tgtgcatggattcttctagagggtcatagcgacaatatgatttcaatcgacgataagttgtgtattacagtgaaatctacgtgtttgataatgttctcaa |
5036577 |
T |
|
| Q |
217 |
atctcggtagactctcccactactatataagaatttctttcctccacatacaaagagcgcgctatttcaatttacatctcactagtttcaatctctcact |
316 |
Q |
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|||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5036576 |
atctcgatagactctcccaccactatataagaatttttttcctccacatacaaagagcgcgctatttcaatttacatctcactagtttcaatctctcact |
5036477 |
T |
|
| Q |
317 |
ggcacgagcatcaaagtgtttgtaggtagtaggtacacagtggaaggcgactacttaaaatctactgtacaccacaccacccccctggagacttcgagta |
416 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| |
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| T |
5036476 |
ggcacgagcatcaaagtgtttgtagatagtaggtacacagtggaaggcgactactcaaaatctactgtacaccacaccacaccactggagacttcgagta |
5036377 |
T |
|
| Q |
417 |
gtcgccttccaccgcgcttcaacacttcccacacaatttagattcagctcgaatcaatcatgaatttt |
484 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5036376 |
gtcgccttccaccacgcttcaacacttcccacacaatttagattcagctcgaatcaataatgaatttt |
5036309 |
T |
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