View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19859_high_2 (Length: 476)
Name: NF19859_high_2
Description: NF19859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19859_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 13615288 - 13615764
Alignment:
| Q |
1 |
actcgtgagaaaatgacagttactaaaagactttttctaatcatacaaaatatgagcaacaaccgaaaggagcggcaatggtgatggaagaagaaaa-gg |
99 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13615288 |
actcgtgagaaaatgacagttactaaacgactttttctaatcatacaaaatatgagcaacaaccgaaaggagcggcaatggtgatggaagaagaaaaagg |
13615387 |
T |
|
| Q |
100 |
gaacaacttgatccaatcctcttcaaacatctctgcttttttcattctatcgaatgtttagttttggaatatgctctatcttgtcccggtcttcccatct |
199 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | |
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| T |
13615388 |
gaacaacttgatccaatccttttcaaacatctctgcttttttcattctatcgaatgtttagttttggaatatgcgctatcttgtcccagtcttcccatgt |
13615487 |
T |
|
| Q |
200 |
tccctccttgcatcgcttcttcaatgctgggcatccaaatatattcaacgaatcaagtggaatgaggtgtctaataccgtccgacaggcattttaattta |
299 |
Q |
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| T |
13615488 |
tccctccttgcatcgcttcttcaatgttgggcatccaaaaatattcaacgaatcaagtgcaatgaggtgtctaataccgtccgacaggcattttaattta |
13615587 |
T |
|
| Q |
300 |
cgacaatgattaatcaccatagattgaagtgattgtcgacctccccataatttctctagtaaatactcaagttcgttgcaaatccggatattaagatgct |
399 |
Q |
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| T |
13615588 |
cgacaatgattaatcaccatagattgaagtgattgccgacctccccataatttctctggtaaatactcaagttcgtggcaaatccggatattaagatgct |
13615687 |
T |
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| Q |
400 |
ccaaagctaggttgaaagattatcatctcctctctttccacttttaacaacctatctaagtttggtaagtcttctat |
476 |
Q |
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| T |
13615688 |
ccaaagctaagttgaaagattctcatctcctctctttccacttttaacaacctatctaagtttggtaagtcttctat |
13615764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 120 - 415
Target Start/End: Original strand, 17981491 - 17981785
Alignment:
| Q |
120 |
cttcaaacatctctgcttttttcattctatcgaatgtttagttttggaatatgctctatcttgtcccggtcttcccatcttccctccttgcatcgcttct |
219 |
Q |
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||||||||||||||||||| | ||||||| |||||| |||| ||||||||| |||||||||||| |||||| | ||||||| ||||||||||||| |
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| T |
17981491 |
cttcaaacatctctgctttct-cattctaaggaatgtgcagttctggaatatgggctatcttgtcccagtcttctccggttccctcattgcatcgcttct |
17981589 |
T |
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| Q |
220 |
tcaatgctgggcatccaaatatattcaacgaatcaagtggaatgaggtgtctaataccgtccgacaggcattttaatttacgacaatgattaatcaccat |
319 |
Q |
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| T |
17981590 |
ccaatgttgggcatgcacgaatagttaatgaatcaagtgcagtaaggtgtctaataccgtccggcaagcatttcaatttcctacaatcaacaatcaccat |
17981689 |
T |
|
| Q |
320 |
agattgaagtgattgtcgacctccccataatttctctagtaaatactcaagttcgttgcaaatccggatattaagatgctccaaagctaggttgaa |
415 |
Q |
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| T |
17981690 |
agattgaagtgattgcagacctccccatattttctctggtaaatactcaagctcgctgcacaaattgatatccagatgcttcaaagctaggttgaa |
17981785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 277
Target Start/End: Original strand, 30202743 - 30202854
Alignment:
| Q |
166 |
gaatatgctctatcttgtcccggtcttcccatcttccctccttgcatcgcttcttcaatgctgggcatccaaatatattcaacgaatcaagtggaatgag |
265 |
Q |
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||||||| |||||||||||| || |||| | |||||||||||||||| | ||||||| |||||| || || || ||| | ||||||||| | |||| |
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| T |
30202743 |
gaatatgtgctatcttgtcccagttctcccctgttccctccttgcatcgttccttcaatattgggcaaccgaaaattgtcagcaaatcaagtgaagtgag |
30202842 |
T |
|
| Q |
266 |
gtgtctaatacc |
277 |
Q |
| |
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|||||||||||| |
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| T |
30202843 |
gtgtctaatacc |
30202854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 156 - 370
Target Start/End: Original strand, 7097998 - 7098212
Alignment:
| Q |
156 |
tttagttttggaatatgctctatcttgtcccggtcttcccatcttccctccttgcatcgcttcttcaatgctgggcatccaaatatattcaacgaatcaa |
255 |
Q |
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||||||||||||||||| |||||||||||| |||||||| | |||||||||||||||||| | |||||| ||||||||||| ||| |||||||||||| |
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| T |
7097998 |
tttagttttggaatatgggctatcttgtcccagtcttcccctgttccctccttgcatcgctccgtcaatgttgggcatccaacaatagtcaacgaatcaa |
7098097 |
T |
|
| Q |
256 |
gtggaatgaggtgtctaataccgtccgacaggcattttaatttacgacaatgattaatcaccatagattgaagtgattgtcgacctccccataatttctc |
355 |
Q |
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||| |||||||||||||||| || | || |||||||||| | ||||| | |||| |||||||||||||||||| |||||||||||| |||||| |
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| T |
7098098 |
gtgcggtgaggtgtctaataccatctggcaagcattttaatctttcacaataagaaatcctcatagattgaagtgattgcagacctccccatattttctc |
7098197 |
T |
|
| Q |
356 |
tagtaaatactcaag |
370 |
Q |
| |
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| T |
7098198 |
tggtaaatactcaag |
7098212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 121 - 415
Target Start/End: Complemental strand, 7583282 - 7582989
Alignment:
| Q |
121 |
ttcaaacatctctgcttttttcattctatcgaatgtttagttttggaatatgctctatcttgtcccggtcttcccatcttccctccttgcatcgcttctt |
220 |
Q |
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||||||||||||||||| || ||||||| | ||||| ||||||| ||||||| ||||||||| || |||||||| | |||||| ||||||| ||| | | |
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| T |
7583282 |
ttcaaacatctctgcttctt-cattctaactaatgtcaagttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgt |
7583184 |
T |
|
| Q |
221 |
caatgctgggcatccaaatatattcaacgaatcaagtggaatgaggtgtctaataccgtccgacaggcattttaatttacgacaatgattaatcaccata |
320 |
Q |
| |
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|||| |||||||||| ||||||||| ||||||||| | |||||||||||||||| || | || |||||||||||| |||| || |||| ||| |
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| T |
7583183 |
caatattgggcatccagcaatattcaacaaatcaagtgcagtgaggtgtctaataccatctggcaagcattttaattttttacaacaataaatcctcatg |
7583084 |
T |
|
| Q |
321 |
gattgaagtgattgtcgacctccccataatttctctagtaaatactcaagttcgttgcaaatccggatattaagatgctccaaagctaggttgaa |
415 |
Q |
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||||| |||||||| ||||||||||| ||||||| ||||||||||||| || | ||||| |||||| |||||||||||| |||||||||| |
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| T |
7583083 |
gattgtagtgattgcaaacctccccatattttctctggtaaatactcaagctcatcgcaaaaagcgatattcagatgctccaaaactaggttgaa |
7582989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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