View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19859_high_7 (Length: 284)
Name: NF19859_high_7
Description: NF19859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19859_high_7 |
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| [»] chr6 (5 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 33673971 - 33673708
Alignment:
| Q |
18 |
ccctcttggatcatggtttttcaatatggagagttgttggtggtgcttatgatgttgctctttttgtaattgaatagtgtttaattcacactatggtttt |
117 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33673971 |
ccctattggatcatggtttttcaatatggagaggtgttggtggtgcttatgatgttgctctttttgtaat-gaatagtgtttaattcacactatggtttt |
33673873 |
T |
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| Q |
118 |
ggagctatgtaaaactctgtcttttgtatatatcatatatgtatgtttttctattttctggtgttaatagtataaaagtttaatttccatcggttattat |
217 |
Q |
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| T |
33673872 |
ggagctatgtaaaact--gtcttttgtatatatcatatatgtatgtttttctattttccggtgttaatagtataaaagtttaatttccattggttattat |
33673775 |
T |
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| Q |
218 |
tattagggtaaattacactaacctccctcaaaattttcttaaatgaaacaaacagcccctctaattt |
284 |
Q |
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| T |
33673774 |
tattaggataaattacactaacctccctcgtagttttcttaaatgaaacaaacactccctctaattt |
33673708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 33685166 - 33685031
Alignment:
| Q |
20 |
ctcttggatcatggtttttcaatatggagagttgttggtggtgcttatgatgttgctctttttgtaattgaatagtgtttaattcacactatggttttgg |
119 |
Q |
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| T |
33685166 |
ctcttggatcatggtttttcaagatggagaggtgttggtggtgcttatgatgttggtctttttgtatttgaatagtgttaaattcacactatggttttgg |
33685067 |
T |
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| Q |
120 |
agctatgtaaaactctgtcttttgtatatatcatatat |
157 |
Q |
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| T |
33685066 |
agctatgaaaaa--ctgtctcttgtatatatcatatat |
33685031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 33692380 - 33692257
Alignment:
| Q |
18 |
ccctcttggatcatggtttttcaatatggagagttgttggtggtgcttatgatgttgctctttttgtaattgaatagtgtttaattcacactatggtttt |
117 |
Q |
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| T |
33692380 |
ccctcttggatcatggtttttcaagatggagaggtgatggtggtgcttatggtgttggtctttttgtaattgaacagtgttaaaatcacattatggtttt |
33692281 |
T |
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| Q |
118 |
ggagctatgtaaaactctgtctttt |
142 |
Q |
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| T |
33692280 |
ggagctatgtaatact-tgtctttt |
33692257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 33663366 - 33663225
Alignment:
| Q |
22 |
cttggatcatggtttttcaatatggagagttgttggtggtgcttatgatgttgctctttttgtaattgaatagtgtttaattcacac----tatggtttt |
117 |
Q |
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| T |
33663366 |
cttggatcatggtttttcaagatggagaggtgttggtggtgcttatgatgttg-tctttatgtaattgattagtgtttaattcacactatatatggtttt |
33663268 |
T |
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| Q |
118 |
ggagctatgtaaaactctgtcttttgtata-tatcatatatgtat |
161 |
Q |
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| T |
33663267 |
ggatctctgtaaaa--ctgtcttttgtacattatcatatatgtat |
33663225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 33663211 - 33663141
Alignment:
| Q |
145 |
atatatcatatatgtatgtttttctattttctggtgttaatagtataaaagtttaatttccatcggttatt |
215 |
Q |
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| T |
33663211 |
atatatcatatatgtatgtttttatattttcttgtgttgatagtaaaaaggtttaactttcatcggttatt |
33663141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 89546 - 89715
Alignment:
| Q |
18 |
ccctcttggatcatggtttttcaatatggagagttgttggtggtgcttatgatgttgctctttttgtaattgaatagtgtttaattcacactatggtttt |
117 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| | | ||||||||| |||||||||||| ||||| ||||||||| |
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| T |
89546 |
ccctcttggatcatggtttttcaagatggagaggtgttggtggtgcttatggtgttggtttgtttgtaattaaatagtgtttaaatcacattatggtttt |
89645 |
T |
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| Q |
118 |
ggagctatgtaaaactctgtct-tttgtatatatcatatatgtatgtttttctattttctggtgttaatagta |
189 |
Q |
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| T |
89646 |
ggagctat-tgaatatttgtctctttgtatatatc--ttatgtatgtttttccattttcttgtgttgatagta |
89715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 110814 - 110738
Alignment:
| Q |
52 |
tgttggtggtgcttatgatgttgctctttttgtaattgaatagtgtttaattcacactatggttttggagctatgtaa |
129 |
Q |
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| T |
110814 |
tgttggtggtgcttatggtgttagtctttt-gtaattgaatagtgtttaaatttcactatggttttgtagctgtgtaa |
110738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 16427679 - 16427639
Alignment:
| Q |
221 |
tagggtaaattacactaacctccctcaaaattttcttaaat |
261 |
Q |
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| T |
16427679 |
tagggtaaattacactcacctcctttaaaattttcttaaat |
16427639 |
T |
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