View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19859_low_10 (Length: 259)

Name: NF19859_low_10
Description: NF19859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19859_low_10
NF19859_low_10
[»] chr1 (3 HSPs)
chr1 (13-245)||(7594307-7594539)
chr1 (103-198)||(18492702-18492798)
chr1 (103-184)||(18471105-18471187)
[»] chr8 (5 HSPs)
chr8 (108-198)||(25865595-25865685)
chr8 (107-198)||(41943839-41943930)
chr8 (107-196)||(38799392-38799481)
chr8 (107-196)||(38822036-38822125)
chr8 (107-198)||(26592063-26592154)
[»] chr2 (4 HSPs)
chr2 (107-198)||(34571588-34571679)
chr2 (117-196)||(34562807-34562886)
chr2 (107-198)||(34579056-34579147)
chr2 (107-198)||(34584805-34584896)
[»] chr7 (1 HSPs)
chr7 (108-198)||(21317469-21317559)
[»] chr5 (3 HSPs)
chr5 (108-198)||(12531387-12531477)
chr5 (108-198)||(12547142-12547232)
chr5 (164-198)||(9869910-9869944)
[»] chr4 (4 HSPs)
chr4 (103-201)||(40035816-40035914)
chr4 (103-201)||(40045141-40045239)
chr4 (107-198)||(34748650-34748741)
chr4 (108-193)||(24860446-24860531)
[»] scaffold0197 (1 HSPs)
scaffold0197 (108-198)||(30907-30996)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 7594307 - 7594539
Alignment:
Q  13 aatatcaacataaacaaatactagagattaaataaaccaaagaggaacaagatttcacaaaaaatcgattatgaaggtaagtaacaaaatttaccttgaa 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  7594307 aatatcaacataaacaaatactagtgattaaataaaccaaagaggaacaagatttcacacaaaatcgtttatgaaggtaagtaacaaaatttaccttgaa 7594406  T
Q  113 atcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcactgtaaatcatatca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7594407 atcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcactgtaaatcatatca 7594506  T
Q  213 atcgaaaattaacaacaacgaaaacctaaattc 245  Q
    |||||||||||||||||||||||||||||||||    
T  7594507 atcgaaaattaacaacaacgaaaacctaaattc 7594539  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 18492798 - 18492702
Alignment:
Q  103 ttaccttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctca-gtactcttctggtacttacggatctcac 198  Q
    |||||||||||||||||| ||||||||| ||||||| ||| |||||||| || ||||| ||||  ||| |||||||||||||| | | |||||||||    
T  18492798 ttaccttgaaatcttgagaaatttcacgaacaagacactggaatggaagtttacggataaaaaattcaggtactcttctggtattcatggatctcac 18492702  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 18471187 - 18471105
Alignment:
Q  103 ttaccttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctca-gtactcttctggta 184  Q
    |||||| || |||||||| ||||||||  ||||||| ||  |||||||||||  |||||||||| ||| ||||||||||||||    
T  18471187 ttacctcgagatcttgagaaatttcacaaacaagacactcgaatggaagcttatggatcaaaagttcaggtactcttctggta 18471105  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 25865685 - 25865595
Alignment:
Q  108 ttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 198  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  25865685 ttgaaatcctgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagctcagtactcttctgatacttacggatctcac 25865595  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 41943930 - 41943839
Alignment:
Q  107 cttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 198  Q
    |||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  41943930 cttgaaatcttgagcaatttcacgaacaagacgttggaatggaagcttacggatcaaaagatcagtactcttctggtatttacggatctcac 41943839  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 38799481 - 38799392
Alignment:
Q  107 cttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctc 196  Q
    |||||||||||||||||||||||| |||||||| || |||||||| || ||||| | ||||||||| |||||||| ||||||||||||||    
T  38799481 cttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggatctc 38799392  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 38822036 - 38822125
Alignment:
Q  107 cttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctc 196  Q
    |||||||||||||||||||||||| |||||||| || |||||||| || ||||| | ||||||||| |||||||| ||||||||||||||    
T  38822036 cttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggatctc 38822125  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 26592154 - 26592063
Alignment:
Q  107 cttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 198  Q
    ||||||||| |||||||| ||||| ||||||||||| || ||||| ||||| || | ||| || || |||||||||||||| ||||||||||    
T  26592154 cttgaaatcctgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcac 26592063  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 34571588 - 34571679
Alignment:
Q  107 cttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 198  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||| || ||||||||||| || ||||||||||| |||||||| |||||||    
T  34571588 cttgaaatcctgagcaatttcacgaacaagacgctggaatggaagtttacggatcaaaagttcggtactcttctgatacttacgtatctcac 34571679  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 34562807 - 34562886
Alignment:
Q  117 tgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctc 196  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||||||||||| ||||| |||||    
T  34562807 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctc 34562886  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 34579056 - 34579147
Alignment:
Q  107 cttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 198  Q
    ||||||||  |||||||||||||| ||||||||||| |||||||| || || |||||||| || |||| |||||| |||||||| |||||||    
T  34579056 cttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcac 34579147  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 34584805 - 34584896
Alignment:
Q  107 cttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 198  Q
    ||||||||  |||||||||||||| ||||||||||| |||||||| || || |||||||| || |||| |||||| |||||||| |||||||    
T  34584805 cttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcac 34584896  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 21317559 - 21317469
Alignment:
Q  108 ttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 198  Q
    |||||||| ||||| |||||||| |||||||| || |||||||| || |  |||| ||||||||| |||||||||||||| ||||| ||||    
T  21317559 ttgaaatcctgagcgatttcacgaacaagacgttggaatggaagttttcttatcagaagctcagtgctcttctggtacttgcggatttcac 21317469  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 12531477 - 12531387
Alignment:
Q  108 ttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 198  Q
    |||||||||||||| |||||||| ||||| | ||| ||||||||||| |  || | |||||| || |||||||||||||| ||||||||||    
T  12531477 ttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggatctcac 12531387  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 12547142 - 12547232
Alignment:
Q  108 ttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 198  Q
    |||||||||||||| |||||||| ||||| | ||| ||||||||||| |  || | |||||| || |||||||||||||| ||||||||||    
T  12547142 ttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggatctcac 12547232  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 9869944 - 9869910
Alignment:
Q  164 aagctcagtactcttctggtacttacggatctcac 198  Q
    ||||||||| |||||||||||||||||||||||||    
T  9869944 aagctcagtgctcttctggtacttacggatctcac 9869910  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 40035914 - 40035816
Alignment:
Q  103 ttaccttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcactgt 201  Q
    |||||||||| || |||||||||||||| || |  | ||| ||||| ||||| | |||||| ||||||||||||||||| ||||| |  ||||||||||    
T  40035914 ttaccttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatacttcctaatctcactgt 40035816  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 40045239 - 40045141
Alignment:
Q  103 ttaccttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcactgt 201  Q
    |||||||||| || |||||||||||||| || |  | ||| || || ||||| | |||||| ||||||||||||||||||||||| |  ||||||||||    
T  40045239 ttaccttgaagtcctgagcaatttcacgaaccaacctctggaaggggagcttcctgatcaagagctcagtactcttctggtacttcctaatctcactgt 40045141  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 34748741 - 34748650
Alignment:
Q  107 cttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 198  Q
    ||||||||| ||||| || ||||| || |||||||| || || || |||||||| |  || || || |||||||||||||||||||||||||    
T  34748741 cttgaaatcctgagcgatctcacgaaccagacgctggaaggggagtttgcggatgaggagttcggtgctcttctggtacttacggatctcac 34748650  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 24860531 - 24860446
Alignment:
Q  108 ttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggat 193  Q
    |||||||||||||| |||||||| || ||||| || |||||||| || ||||| | |||||| || || || |||||||| |||||    
T  24860531 ttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggat 24860446  T

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Target: scaffold0197 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 30996 - 30907
Alignment:
Q  108 ttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 198  Q
    |||||||| ||||| |||||||| |||||||| || |||| ||| || |  |||| ||||||||| |||||||||||||| ||||| ||||    
T  30996 ttgaaatcctgagcgatttcacgaacaagacgttggaatg-aagttttcttatcagaagctcagtgctcttctggtacttgcggatttcac 30907  T

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