View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19859_low_5 (Length: 326)
Name: NF19859_low_5
Description: NF19859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19859_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 37878953 - 37879130
Alignment:
| Q |
1 |
aaattataagatttaagccacaaaagttaaacaaaagaacaacaaaaaagaatcaaccagtaaggaaaatagttattctagcaaaaatatgttactcaaa |
100 |
Q |
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| T |
37878953 |
aaattataagatttaagccacaaaagttaaacaaaagaacaacaaaaaagaatcaaccagtaaggaaaatagttattctagcaaaaatatgttactcaaa |
37879052 |
T |
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| Q |
101 |
ttcaattcaccaagggaagtttcaaacttttatagtcaaaaatcatagaagagggactcatttatagaaaggtgatat |
178 |
Q |
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| T |
37879053 |
ttcaattcaccaaggaaagtttcaaacttttatagtcaaaaatcatagaagagggactcatttatagaaaggtgatat |
37879130 |
T |
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Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 37879201 - 37879273
Alignment:
| Q |
238 |
cgcacctgttcttcttctaactgcttattctctatctccaaacgcttaaccaggctctcaagctcagtagtat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37879201 |
cgcacctgttcttcttctaactgcttattctctatctccaaatgcttaaccaggctctcaagctcagtagtat |
37879273 |
T |
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