View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1985_low_1 (Length: 330)

Name: NF1985_low_1
Description: NF1985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1985_low_1
NF1985_low_1
[»] chr1 (4 HSPs)
chr1 (15-323)||(6617324-6617632)
chr1 (113-156)||(24701107-24701150)
chr1 (109-176)||(21057771-21057839)
chr1 (123-188)||(40747790-40747854)
[»] chr7 (3 HSPs)
chr7 (113-156)||(10893354-10893397)
chr7 (122-166)||(1934950-1934994)
chr7 (109-157)||(37775990-37776038)
[»] scaffold0019 (1 HSPs)
scaffold0019 (109-157)||(104455-104503)
[»] chr4 (2 HSPs)
chr4 (109-184)||(43093528-43093604)
chr4 (114-166)||(21732368-21732420)
[»] chr8 (4 HSPs)
chr8 (114-157)||(1586616-1586659)
chr8 (122-157)||(18474573-18474608)
chr8 (109-141)||(6205229-6205261)
chr8 (109-157)||(32691751-32691799)
[»] chr3 (2 HSPs)
chr3 (109-159)||(19323451-19323501)
chr3 (114-159)||(25908847-25908892)
[»] chr6 (2 HSPs)
chr6 (109-154)||(6284664-6284709)
chr6 (108-165)||(19343520-19343577)
[»] chr5 (2 HSPs)
chr5 (109-154)||(27253296-27253341)
chr5 (123-160)||(39342459-39342496)
[»] scaffold0206 (1 HSPs)
scaffold0206 (113-149)||(9464-9500)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 6617324 - 6617632
Alignment:
Q  15 tttgtttcataaacttatttaattttatttaatttttatataaacctgctaaacccccgtcttttttgtgtaagacacggacatcttgtcccggcactaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6617324 tttgtttcataaacttatttaattttatttaatttttatataaacctgctaaacccccgtcttttttgtgtaagacagggacatcttgtcccggcactaa 6617423  T
Q  115 cacatgcgattacattcaattatgtcaatttttcaaattactatcgctgtcgcgtgtcagtgtctgtgtccgtggatgannnnnnnngcaatatcttgat 214  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  6617424 ctcatgcgattacattcaattatgtcaatttttcaaattactatcgctgtcgcgtgtcagtgtctgtgtccgtggatgattttttttgcaatatcttgat 6617523  T
Q  215 tcttgattgtgattacttttttatgttgatgtttatttgtgcagggaggagctgttcttgttgaacatatagctannnnnnngattcatgggttggctta 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  6617524 tcttgattgtgattacttttttatgttgatgtttatttgtgcagggaggagctgttcttgttgaacatatagctattttttttattcatgggttggctta 6617623  T
Q  315 gtataattt 323  Q
    ||| |||||    
T  6617624 gtagaattt 6617632  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 24701107 - 24701150
Alignment:
Q  113 aacacatgcgattacattcaattatgtcaatttttcaaattact 156  Q
    |||| |||||||||||||||||||||||| ||||||||||||||    
T  24701107 aacagatgcgattacattcaattatgtcattttttcaaattact 24701150  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 21057839 - 21057771
Alignment:
Q  109 cactaacacatgcgattacattcaattatgtcaatttttcaaattactatcgctgtcg-cgtgtcagtg 176  Q
    ||||||||||||||||||||||||||||||| | ||| | |||||| || || ||||| ||||||||||    
T  21057839 cactaacacatgcgattacattcaattatgttattttctaaaattattagcggtgtcgacgtgtcagtg 21057771  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 40747790 - 40747854
Alignment:
Q  123 attacattcaattatgtcaatttttcaaattactatcgctgtcgcgtgtcagtgtctgtgtccgtg 188  Q
    |||||||| |||||||||| ||| |||||||| ||||  ||||| ||||| |||||||||||||||    
T  40747790 attacattgaattatgtcattttctcaaattattatccgtgtcg-gtgtctgtgtctgtgtccgtg 40747854  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 10893354 - 10893397
Alignment:
Q  113 aacacatgcgattacattcaattatgtcaatttttcaaattact 156  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||    
T  10893354 aacacatgcgattacattcaattatgtcattttctcaaattact 10893397  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 1934994 - 1934950
Alignment:
Q  122 gattacattcaattatgtcaatttttcaaattactatcgctgtcg 166  Q
    ||||||||||||||||||||||||| ||||||| ||||| |||||    
T  1934994 gattacattcaattatgtcaattttacaaattattatcggtgtcg 1934950  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 37776038 - 37775990
Alignment:
Q  109 cactaacacatgcgattacattcaattatgtcaatttttcaaattacta 157  Q
    |||| ||||||| ||||||||| |||||||||| ||| |||||||||||    
T  37776038 cactgacacatgtgattacatttaattatgtcattttctcaaattacta 37775990  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 104503 - 104455
Alignment:
Q  109 cactaacacatgcgattacattcaattatgtcaatttttcaaattacta 157  Q
    ||||||||||||  ||||||||||||| ||||| |||||||||||||||    
T  104503 cactaacacatgttattacattcaattctgtcactttttcaaattacta 104455  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 43093528 - 43093604
Alignment:
Q  109 cactaacacatgcgattacattcaattatgtcaatttttcaaattactatcgctgtcg-cgtgtcagtgtctgtgtc 184  Q
    ||||| |||||| ||||||||||||||||| || |||||||||||| ||| | ||| | |||||||||||| |||||    
T  43093528 cactatcacatgtgattacattcaattatgccattttttcaaattattatgggtgttgacgtgtcagtgtcagtgtc 43093604  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 21732368 - 21732420
Alignment:
Q  114 acacatgcgattacattcaattatgtcaatttttcaaattactatcgctgtcg 166  Q
    ||||||| ||||||| |||||||||||| ||||||||||| ||| || |||||    
T  21732368 acacatgtgattacaatcaattatgtcattttttcaaattcctaccggtgtcg 21732420  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 1586659 - 1586616
Alignment:
Q  114 acacatgcgattacattcaattatgtcaatttttcaaattacta 157  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||    
T  1586659 acacatgtgattacgttcaattatgtcattttttcaaattacta 1586616  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 18474573 - 18474608
Alignment:
Q  122 gattacattcaattatgtcaatttttcaaattacta 157  Q
    |||||||||||||||||||||||||| |||||||||    
T  18474573 gattacattcaattatgtcaattttttaaattacta 18474608  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 6205229 - 6205261
Alignment:
Q  109 cactaacacatgcgattacattcaattatgtca 141  Q
    |||| ||||||||||||||||||||||||||||    
T  6205229 cactgacacatgcgattacattcaattatgtca 6205261  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 32691799 - 32691751
Alignment:
Q  109 cactaacacatgcgattacattcaattatgtcaatttttcaaattacta 157  Q
    |||| ||||||| |||||||||||||||||||| ||| | |||||||||    
T  32691799 cactgacacatgtgattacattcaattatgtcattttcttaaattacta 32691751  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 19323451 - 19323501
Alignment:
Q  109 cactaacacatgcgattacattcaattatgtcaatttttcaaattactatc 159  Q
    |||| ||||||| ||||| |||||||||||||| ||| |||||||||||||    
T  19323451 cacttacacatgtgattaaattcaattatgtcattttctcaaattactatc 19323501  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 25908847 - 25908892
Alignment:
Q  114 acacatgcgattacattcaattatgtcaatttttcaaattactatc 159  Q
    |||||| |||||| ||| |||||||||| |||||||||||||||||    
T  25908847 acacatacgattatattgaattatgtcattttttcaaattactatc 25908892  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 6284664 - 6284709
Alignment:
Q  109 cactaacacatgcgattacattcaattatgtcaatttttcaaatta 154  Q
    |||||||||||| ||||| |||||||||||||| ||| ||||||||    
T  6284664 cactaacacatgtgattaaattcaattatgtcattttctcaaatta 6284709  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 19343520 - 19343577
Alignment:
Q  108 gcactaacacatgcgattacattcaattatgtcaatttttcaaattactatcgctgtc 165  Q
    |||| |||||||| ||||||||| ||| |||||| |||||||||||| ||||| ||||    
T  19343520 gcaccaacacatgtgattacattgaatcatgtcactttttcaaattaatatcggtgtc 19343577  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 27253341 - 27253296
Alignment:
Q  109 cactaacacatgcgattacattcaattatgtcaatttttcaaatta 154  Q
    |||| ||||||| ||||||||||||||||| || ||||||||||||    
T  27253341 cactgacacatgtgattacattcaattatgacattttttcaaatta 27253296  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 39342496 - 39342459
Alignment:
Q  123 attacattcaattatgtcaatttttcaaattactatcg 160  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  39342496 attacattgaattatgtcaatttttcaaattattatcg 39342459  T

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Target: scaffold0206 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 9464 - 9500
Alignment:
Q  113 aacacatgcgattacattcaattatgtcaatttttca 149  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  9464 aacacatgcgatttcattcaattatgtcattttttca 9500  T

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