View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1985_low_2 (Length: 257)

Name: NF1985_low_2
Description: NF1985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1985_low_2
NF1985_low_2
[»] chr1 (4 HSPs)
chr1 (20-242)||(29452759-29452981)
chr1 (95-242)||(29467233-29467380)
chr1 (117-189)||(29442820-29442892)
chr1 (115-240)||(29423828-29423953)
[»] chr2 (11 HSPs)
chr2 (82-189)||(12005620-12005727)
chr2 (82-142)||(12012095-12012155)
chr2 (115-242)||(14550934-14551061)
chr2 (95-189)||(12018384-12018478)
chr2 (97-189)||(11986983-11987075)
chr2 (115-149)||(8579035-8579069)
chr2 (115-148)||(9365209-9365242)
chr2 (79-141)||(8573046-8573108)
chr2 (83-141)||(10348313-10348371)
chr2 (84-149)||(10336367-10336432)
chr2 (116-148)||(7612511-7612543)
[»] chr8 (1 HSPs)
chr8 (70-142)||(41966263-41966335)
[»] chr4 (1 HSPs)
chr4 (114-145)||(561786-561817)
[»] scaffold0667 (1 HSPs)
scaffold0667 (79-141)||(5004-5066)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 29452981 - 29452759
Alignment:
Q  20 taacggatcaaaaccaaagccgtgaacacatgagagaaagtggacgttgccagaacgaggaggaggaatagaaagagggagattaggaatattctgatgt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29452981 taacggatcaaaaccaaagccgtgaacacatgagagaaagtggacgttgccagaacgaggaggaggaatagaaatagggagattaggaatattctgatgt 29452882  T
Q  120 ttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactgaacatagagatgttgttgttggggagtt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29452881 ttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactgaacagagagatgttgttgttggggagtt 29452782  T
Q  220 tgaaaggaagattgagtttaatg 242  Q
    |||||||||||||||||||||||    
T  29452781 tgaaaggaagattgagtttaatg 29452759  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 29467380 - 29467233
Alignment:
Q  95 agggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactgaac 194  Q
    |||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| ||||    
T  29467380 agggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattgatggaaatgcagagaaggccgttacatgaaccgaac 29467281  T
Q  195 atagagatgttgttgttggggagtttgaaaggaagattgagtttaatg 242  Q
    | |||||||  ||||||||||| |||||||||||||||||||||||||    
T  29467280 agagagatgaagttgttggggattttgaaaggaagattgagtttaatg 29467233  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 29442892 - 29442820
Alignment:
Q  117 tgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaac 189  Q
    |||||||||||||||||||||||||||||||||||  |||||| || |||| |||||||||||||||||||||    
T  29442892 tgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaac 29442820  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 29423828 - 29423953
Alignment:
Q  115 gatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactgaacatagagatgttgttgttggg 214  Q
    ||||||||| |||| |||||||||||||||||||| |  ||| || |   | | ||||||||||||||||||| | || || |||||||  ||||||||     
T  29423828 gatgtttacagatggtagggttccagaaagcgatttcaccatcggagaagaggcagagaaggccgttacatgatccgaccagagagatgaagttgttgga 29423927  T
Q  215 gagtttgaaaggaagattgagtttaa 240  Q
    |  |||||||||| ||||||||||||    
T  29423928 gcctttgaaaggaggattgagtttaa 29423953  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 12005727 - 12005620
Alignment:
Q  82 gaggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgtt 181  Q
    ||||||||| || |||||||||||| ||| || |||||||||||||||||||||||||||||| |||| || | |||| || |||| |||| ||||||||    
T  12005727 gaggaataggaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttcggctttggaggaaatgcagaggaggccgtt 12005628  T
Q  182 acatgaac 189  Q
    ||||||||    
T  12005627 acatgaac 12005620  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 12012155 - 12012095
Alignment:
Q  82 gaggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccagaa 142  Q
    |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  12012155 gaggaatagaaacagggagattagggataatctgatgtttacggatgttagggttccagaa 12012095  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 14550934 - 14551061
Alignment:
Q  115 gatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactgaacatagagatgttgttgttggg 214  Q
    ||||||||||||||||||||||||| ||||| ||| || ||||||     ||| ||||||| ||||||||||||| || || |||||||  |||||||      
T  14550934 gatgtttacggatgttagggttccataaagcaatttcgccattggaaaagatgtagagaagaccgttacatgaaccgagcagagagatgaagttgttgaa 14551033  T
Q  215 gagtttgaaaggaagattgagtttaatg 242  Q
    |  || ||||||||||||||||||||||    
T  14551034 gccttcgaaaggaagattgagtttaatg 14551061  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 12018478 - 12018384
Alignment:
Q  95 agggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaac 189  Q
    |||||||| ||| ||| || ||||||||||||||| ||||||||||||||||||| ||   |||| || |||| |||| ||||||||||||||||    
T  12018478 agggagatgagggataatccgatgtttacggatgtaagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaac 12018384  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 11987075 - 11986983
Alignment:
Q  97 ggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaac 189  Q
    |||||| ||| ||| || ||||||||||| ||||||||||||||||||||||| ||   |||| || |||| |||| ||||||||||||||||    
T  11987075 ggagatgagggataatccgatgtttacgggtgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaac 11986983  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 8579069 - 8579035
Alignment:
Q  115 gatgtttacggatgttagggttccagaaagcgatt 149  Q
    |||||||||||||||||||||||||||||||||||    
T  8579069 gatgtttacggatgttagggttccagaaagcgatt 8579035  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 9365209 - 9365242
Alignment:
Q  115 gatgtttacggatgttagggttccagaaagcgat 148  Q
    ||||||||||||||||||||||||||||||||||    
T  9365209 gatgtttacggatgttagggttccagaaagcgat 9365242  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 8573108 - 8573046
Alignment:
Q  79 gaggaggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccaga 141  Q
    |||||| ||||| ||||||||||  ||| ||| | |||||||||||| |||||||||||||||    
T  8573108 gaggagtaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccaga 8573046  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 10348313 - 10348371
Alignment:
Q  83 aggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccaga 141  Q
    |||||||| ||||||||||  ||| ||| | |||||||||||| |||||||||||||||    
T  10348313 aggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccaga 10348371  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 10336367 - 10336432
Alignment:
Q  84 ggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccagaaagcgatt 149  Q
    ||||||| ||||||||||| ||| ||| || |||||||||||||| |||| || ||||| ||||||    
T  10336367 ggaataggaagagggagataagggataatccgatgtttacggatggtaggattacagaatgcgatt 10336432  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 7612511 - 7612543
Alignment:
Q  116 atgtttacggatgttagggttccagaaagcgat 148  Q
    |||||||||||||||||||||||| ||||||||    
T  7612511 atgtttacggatgttagggttccataaagcgat 7612543  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 41966335 - 41966263
Alignment:
Q  70 cagaacgaggaggaggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccagaa 142  Q
    |||||||| | |||||||||| || |||||||  ||| ||| || ||||||||| ||||||||||||||||||    
T  41966335 cagaacgacggggaggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 41966263  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 561786 - 561817
Alignment:
Q  114 tgatgtttacggatgttagggttccagaaagc 145  Q
    ||||||||||||||||||||||||||||||||    
T  561786 tgatgtttacggatgttagggttccagaaagc 561817  T

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Target: scaffold0667 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 5004 - 5066
Alignment:
Q  79 gaggaggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccaga 141  Q
    |||||| |||||  |||||||||  ||| ||| | ||||||||||||||||||||||||||||    
T  5004 gaggagtaataggtagagggagaaaagggataatgtgatgtttacggatgttagggttccaga 5066  T

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