View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1985_low_3 (Length: 247)

Name: NF1985_low_3
Description: NF1985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1985_low_3
NF1985_low_3
[»] chr6 (13 HSPs)
chr6 (17-183)||(8770359-8770525)
chr6 (17-183)||(3100967-3101133)
chr6 (17-151)||(30125368-30125502)
chr6 (17-178)||(6940378-6940539)
chr6 (67-183)||(31834068-31834184)
chr6 (81-176)||(18999328-18999430)
chr6 (208-247)||(3101158-3101197)
chr6 (208-247)||(8770550-8770589)
chr6 (17-58)||(17436865-17436906)
chr6 (74-114)||(17436724-17436764)
chr6 (208-247)||(6941462-6941501)
chr6 (17-58)||(11172526-11172567)
chr6 (17-50)||(17436824-17436857)
[»] chr1 (22 HSPs)
chr1 (17-183)||(14795577-14795743)
chr1 (17-183)||(14804451-14804617)
chr1 (17-176)||(51251049-51251208)
chr1 (18-183)||(50049950-50050115)
chr1 (17-175)||(19584852-19585010)
chr1 (17-183)||(40709695-40709861)
chr1 (17-183)||(8059154-8059320)
chr1 (17-176)||(31200369-31200528)
chr1 (17-183)||(21968866-21969033)
chr1 (17-142)||(29030824-29030950)
chr1 (74-178)||(39330648-39330759)
chr1 (17-62)||(39330849-39330894)
chr1 (208-247)||(14795513-14795552)
chr1 (208-247)||(19585043-19585082)
chr1 (208-247)||(31200561-31200600)
chr1 (74-176)||(38035954-38036063)
chr1 (208-247)||(51251240-51251279)
chr1 (112-178)||(14293426-14293492)
chr1 (209-247)||(21968802-21968840)
chr1 (208-247)||(40709631-40709670)
chr1 (208-247)||(50049886-50049925)
chr1 (209-247)||(14293357-14293395)
[»] chr8 (17 HSPs)
chr8 (17-176)||(2716-2875)
chr8 (17-177)||(232131-232291)
chr8 (17-177)||(708542-708702)
chr8 (17-177)||(745754-745914)
chr8 (17-177)||(869649-869809)
chr8 (17-183)||(31627691-31627857)
chr8 (17-176)||(33365147-33365306)
chr8 (208-247)||(33365076-33365115)
chr8 (67-114)||(37674899-37674946)
chr8 (208-247)||(232061-232100)
chr8 (208-247)||(708472-708511)
chr8 (208-247)||(745684-745723)
chr8 (208-247)||(869579-869618)
chr8 (67-114)||(37781363-37781410)
chr8 (17-58)||(37781231-37781272)
chr8 (17-58)||(39919001-39919042)
chr8 (74-114)||(39919141-39919181)
[»] chr5 (22 HSPs)
chr5 (17-183)||(29289488-29289654)
chr5 (17-183)||(9888791-9888957)
chr5 (17-183)||(16049109-16049275)
chr5 (17-176)||(23927955-23928114)
chr5 (81-178)||(26363209-26363307)
chr5 (81-178)||(10540600-10540704)
chr5 (81-178)||(35667358-35667459)
chr5 (208-247)||(14634662-14634701)
chr5 (208-247)||(23927885-23927924)
chr5 (208-247)||(35667289-35667328)
chr5 (112-178)||(40484810-40484876)
chr5 (17-58)||(10540460-10540501)
chr5 (17-58)||(35667558-35667599)
chr5 (208-247)||(9888728-9888767)
chr5 (208-247)||(16049300-16049339)
chr5 (208-247)||(26363337-26363376)
chr5 (208-247)||(29289423-29289462)
chr5 (74-176)||(34696857-34696959)
chr5 (84-178)||(41359370-41359471)
chr5 (75-176)||(14634521-14634629)
chr5 (17-79)||(40484669-40484731)
chr5 (208-242)||(40484906-40484940)
[»] chr2 (17 HSPs)
chr2 (17-183)||(22416880-22417046)
chr2 (17-183)||(34899601-34899767)
chr2 (17-183)||(30356978-30357144)
chr2 (17-183)||(37575601-37575767)
chr2 (17-171)||(17474055-17474212)
chr2 (17-89)||(16749712-16749784)
chr2 (81-178)||(8371459-8371561)
chr2 (81-178)||(8423317-8423419)
chr2 (81-178)||(27451155-27451259)
chr2 (208-247)||(8423248-8423287)
chr2 (17-56)||(27451364-27451403)
chr2 (17-58)||(8423518-8423559)
chr2 (24-84)||(40332975-40333035)
chr2 (208-247)||(8371390-8371429)
chr2 (208-247)||(22417071-22417110)
chr2 (208-247)||(30356914-30356953)
chr2 (208-247)||(34899792-34899831)
[»] chr7 (22 HSPs)
chr7 (17-183)||(36107494-36107660)
chr7 (17-183)||(40210151-40210317)
chr7 (19-176)||(41987150-41987307)
chr7 (17-183)||(24954681-24954844)
chr7 (25-183)||(33438626-33438784)
chr7 (75-178)||(3937289-3937399)
chr7 (74-178)||(3407377-3407488)
chr7 (74-183)||(32538500-32538616)
chr7 (208-247)||(40210087-40210126)
chr7 (17-58)||(3407579-3407620)
chr7 (17-58)||(44959615-44959656)
chr7 (17-97)||(25981398-25981478)
chr7 (208-247)||(24954869-24954908)
chr7 (208-247)||(28363460-28363499)
chr7 (208-247)||(33438562-33438601)
chr7 (208-247)||(36107685-36107724)
chr7 (208-247)||(37632544-37632583)
chr7 (213-247)||(12512504-12512538)
chr7 (17-58)||(32538416-32538457)
chr7 (17-58)||(37632761-37632802)
chr7 (74-114)||(16279760-16279800)
chr7 (103-154)||(28363360-28363412)
[»] chr4 (16 HSPs)
chr4 (17-183)||(23723266-23723432)
chr4 (17-176)||(32951306-32951465)
chr4 (17-183)||(42547434-42547600)
chr4 (17-183)||(27925299-27925465)
chr4 (74-176)||(28044004-28044107)
chr4 (208-247)||(890319-890358)
chr4 (83-178)||(43342515-43342617)
chr4 (81-178)||(890388-890493)
chr4 (208-247)||(23723456-23723495)
chr4 (208-247)||(28044139-28044178)
chr4 (208-247)||(32951235-32951274)
chr4 (208-247)||(54578360-54578399)
chr4 (17-58)||(890592-890633)
chr4 (17-58)||(28043870-28043911)
chr4 (17-78)||(34950529-34950590)
chr4 (17-50)||(43342676-43342709)
[»] scaffold0001 (2 HSPs)
scaffold0001 (17-183)||(397271-397437)
scaffold0001 (208-247)||(397462-397501)
[»] chr3 (18 HSPs)
chr3 (17-183)||(48432973-48433139)
chr3 (17-183)||(4774260-4774426)
chr3 (17-183)||(39085161-39085327)
chr3 (17-183)||(12025998-12026165)
chr3 (81-178)||(53592786-53592890)
chr3 (208-247)||(39085353-39085392)
chr3 (208-247)||(48433164-48433203)
chr3 (17-154)||(15042187-15042325)
chr3 (26-120)||(26829439-26829532)
chr3 (213-247)||(53592924-53592958)
chr3 (17-58)||(45222756-45222797)
chr3 (17-58)||(52498604-52498645)
chr3 (17-58)||(53592646-53592687)
chr3 (81-152)||(52498428-52498506)
chr3 (208-247)||(12026190-12026229)
chr3 (112-179)||(28700253-28700320)
chr3 (208-247)||(52497444-52497483)
chr3 (67-171)||(14609423-14609528)
[»] scaffold0123 (1 HSPs)
scaffold0123 (17-58)||(26812-26853)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 8770359 - 8770525
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8770359 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 8770458  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8770459 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacccatta 8770525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 3100967 - 3101133
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  3100967 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattctttttcctctctatgaaaatgaaatt 3101066  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||    
T  3101067 aaaatttggaaattattgggtaaattggtttattgggtatggatccggttttacccaaaacccatta 3101133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 30125502 - 30125368
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30125502 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 30125403  T
Q  117 aaaatttgaaaattattgggtaagttggtttattg 151  Q
    | |||||| ||||||||||||||||||||||||||    
T  30125402 agaatttggaaattattgggtaagttggtttattg 30125368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 6940378 - 6940539
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    |||||||||| |||| ||||||||||||||||||| |||||| |||| ||||||||||||||| || |||| |||||||||| ||||||||||||||| |    
T  6940378 attttcaataaagaggatgtgttgtgtcaattttagaaattagactagatttatgatcaaaacctt-gttactcttcttccttcctatgaaaatgaaaat 6940476  T
Q  117 aaaatttgaaa-attattgggtaagttggtttattgggtatgggtccggttttacccaaaacc 178  Q
    |||| |  | | |||||||||||||| |||||||||||| || ||| ||||||||||||||||    
T  6940477 aaaaatatagacattattgggtaagtgggtttattgggtctgagtctggttttacccaaaacc 6940539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 183
Target Start/End: Complemental strand, 31834184 - 31834068
Alignment:
Q  67 ttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattgggtatgggtccggtt 166  Q
    |||| |||||||| ||||||||||| |||||||||||||||||||||| ||||| |   | |||||||| ||||| |||||||||||| |||||| ||||    
T  31834184 ttataatcaaaacctttgttattctccttcctccctatgaaaatgaaaataaaaatatgacattattggataagtgggtttattgggtctgggtctggtt 31834085  T
Q  167 ttacccaaaacctatta 183  Q
    |||||||||||| ||||    
T  31834084 ttacccaaaacccatta 31834068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 176
Target Start/End: Complemental strand, 18999430 - 18999328
Alignment:
Q  81 tttgttattcttcttcctccctatgaaaatgaaattaaaa-------tttgaaaattattgggtaagttggtttattgggtatgggtccggttttaccca 173  Q
    ||||||||||| |||||||||||||||||||||| | |||       | |||| |||||||||||||| |||||||||||| |||||| |||||||||||    
T  18999430 tttgttattctccttcctccctatgaaaatgaaaatgaaaaaaaatatatgaacattattgggtaagtgggtttattgggtttgggtctggttttaccca 18999331  T
Q  174 aaa 176  Q
    |||    
T  18999330 aaa 18999328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 3101158 - 3101197
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  3101158 aaaaccatatccacccaatcacccaacccaacccactttt 3101197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 8770550 - 8770589
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  8770550 aaaaccatatccacccaatcacccaacccaacccactttt 8770589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 17436906 - 17436865
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  17436906 attttcaatatagaggatgtgttgtgtcaattttagaaatta 17436865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 17436764 - 17436724
Alignment:
Q  74 caaaacatttgttattcttcttcctccctatgaaaatgaaa 114  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  17436764 caaaacttttgttattctccttcctccctatgaaaatgaaa 17436724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 6941462 - 6941501
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  6941462 aaaaccatatccacccaatcacccaacccaatccactttt 6941501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 11172526 - 11172567
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| ||||||||| ||||||||| ||||||    
T  11172526 attttcaatatagaggatgtgttgtatcaattttagaaatta 11172567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 17436857 - 17436824
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaatttt 50  Q
    |||||||||||||||||| |||||||||||||||    
T  17436857 attttcaatatagagaatttgttgtgtcaatttt 17436824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 14795743 - 14795577
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14795743 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 14795644  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14795643 aaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacccatta 14795577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 14804617 - 14804451
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14804617 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 14804518  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14804517 aaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacccatta 14804451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 51251049 - 51251208
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51251049 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 51251148  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaa 176  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  51251149 aaaatttggaaattattgggtaagttggtttattgggtatgggttcggttttacccaaaa 51251208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 50050115 - 50049950
Alignment:
Q  18 ttttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatta 117  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  50050115 ttttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctataaaaatgaaatta 50050016  T
Q  118 aaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  50050015 aaatttggaaattattgggtaagttggtttattgggtatgggtccggttttactcaaaacccatta 50049950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 19584852 - 19585010
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19584852 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 19584951  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaa 175  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  19584952 aaaatttggaaattattgggtaagttggtttattgggtatgagttcggttttacccaaa 19585010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 40709861 - 40709695
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  40709861 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacacttgttattcttcttcttccctatgaaaatgaaatt 40709762  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  40709761 aaaatttgaaaattattgggtaagttggtttattgggtatggatccagttttacccaaaacccatta 40709695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 8059320 - 8059154
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8059320 attttcaatatagaggatgtgttgtgtcaattttagaaattaaattaaatttatgatcaaaatatttgttattcttcttcctccctatgaaaatgaaatt 8059221  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||    
T  8059220 aaaatttggaaattattaggtaagttggtttattgagtatgggtcctgttttacccaaaacccatta 8059154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 31200369 - 31200528
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31200369 attttcaatatagaggatatgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 31200468  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaa 176  Q
    |||||||  |||||||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  31200469 aaaatttagaaattattgggtaaattggtttattgggtatgagtccgattttacccaaaa 31200528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 21969033 - 21968866
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||  |||||||||||||||||||| || |||||| ||||||| |||||||||||    
T  21969033 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaatcttatgatcaaaacatttgttgttattcttcttccctataaaaatgaaatt 21968934  T
Q  117 aaaatttgaaaatt-attgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||| ||||    
T  21968933 aaaatttgaaaattaattgggtaagttggtttattgtgtatgggtccagttttacctaaaacccatta 21968866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 29030824 - 29030950
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatg-aaat 115  Q
    ||||| ||||||||  ||||||||||| ||||||| ||||||||||  ||||||||||||||| ||||||||||| ||||||||||||||||| | ||||    
T  29030824 atttttaatatagaagatgtgttgtgtgaattttagaaattaaacttcatttatgatcaaaacctttgttattctccttcctccctatgaaaacgaaaat 29030923  T
Q  116 taaaatttgaaaattattgggtaagtt 142  Q
     ||||| || | |||||||||||||||    
T  29030924 aaaaatatggacattattgggtaagtt 29030950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 39330759 - 39330648
Alignment:
Q  74 caaaacatttgttattcttcttcctccctatgaaaatgaaatt-------aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggtt 166  Q
    |||||| ||||||||||| |||||||||||||||||||||| |       ||||| ||||||||||||||||||| |||||| || || |||||| ||||    
T  39330759 caaaacctttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaaaattattgggtaagtgggtttaatgtgtttgggtctggtt 39330660  T
Q  167 ttacccaaaacc 178  Q
    ||||||||||||    
T  39330659 ttacccaaaacc 39330648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 39330894 - 39330849
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaact 62  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  39330894 attttcaatatagaggatgtgttgtgtcaattttagaaattaaact 39330849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 14795552 - 14795513
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  14795552 aaaaccatatccacccaatcacccaacccaacccactttt 14795513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 19585043 - 19585082
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  19585043 aaaaccatatccacccaatcacccaacccaacccactttt 19585082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 31200561 - 31200600
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  31200561 aaaaccatatccacccaatcacccaacccaacccactttt 31200600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 38036063 - 38035954
Alignment:
Q  74 caaaacatttgttattcttcttcctccctatgaaaatg-------aaattaaaatttgaaaattattgggtaagttggtttattgggtatgggtccggtt 166  Q
    |||||| ||||||||||| |||||||||||||||||||       |||| ||||| || | |||||||||||||| |||||||||  | |||||| ||||    
T  38036063 caaaacttttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatggacattattgggtaagtgggtttattgaatctgggtctggtt 38035964  T
Q  167 ttacccaaaa 176  Q
    ||| ||||||    
T  38035963 ttatccaaaa 38035954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 51251240 - 51251279
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  51251240 aaaaccatatccacccaatcacccaacccaacccactttt 51251279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 14293492 - 14293426
Alignment:
Q  112 aaattaaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacc 178  Q
    |||| ||||| |||| ||||||| |||||| |||||||||| | |||||| ||||||||||||||||    
T  14293492 aaataaaaatatgaacattattgcgtaagtgggtttattggatctgggtctggttttacccaaaacc 14293426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 21968840 - 21968802
Alignment:
Q  209 aaaccatatccacccaatcatccaacccaacccactttt 247  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  21968840 aaaccatatccacccaatcacccaacccaacccactttt 21968802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 40709670 - 40709631
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  40709670 aaaatcatatccacccaatcacccaacccaacccactttt 40709631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 50049925 - 50049886
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  50049925 aaaaccatatccacccaatcacccaacctaacccactttt 50049886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 14293395 - 14293357
Alignment:
Q  209 aaaccatatccacccaatcatccaacccaacccactttt 247  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  14293395 aaaccatatctacccaatcaaccaacccaacccactttt 14293357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 2875 - 2716
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2875 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 2776  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaa 176  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2775 aaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaa 2716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 232291 - 232131
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  232291 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttctttctccctatgaaaatgaaatt 232192  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaac 177  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  232191 aaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaac 232131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 708702 - 708542
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  708702 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttctttctccctatgaaaatgaaatt 708603  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaac 177  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  708602 aaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaac 708542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 745914 - 745754
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  745914 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttctttctccctatgaaaatgaaatt 745815  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaac 177  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  745814 aaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaac 745754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 869809 - 869649
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  869809 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttctttctccctatgaaaatgaaatt 869710  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaac 177  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  869709 aaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaac 869649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 31627857 - 31627691
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  31627857 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacattttttattcttcttcttccctatgaaaatgaaatt 31627758  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  31627757 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccagttttacccaaaacccatta 31627691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 33365306 - 33365147
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    |||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33365306 attttcaatataaaggatgtgttgtgtcaattttaaaaattaaactaaatttatgatcaaaacatttgttattcttcttcctctctatgaaaatgaaatt 33365207  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaa 176  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33365206 aaaatttgaaaattattgggtaagttggtttattgggtatgggttcggttttacccaaaa 33365147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 33365115 - 33365076
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  33365115 aaaaccatatccacccaatcacccaacccaacccactttt 33365076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 37674946 - 37674899
Alignment:
Q  67 ttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaa 114  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||    
T  37674946 ttataatcaaaacctttgttattctccttcctccctatgaaaatgaaa 37674899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 232100 - 232061
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  232100 aaaaccatatccacccaatcacccaacccaacctactttt 232061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 708511 - 708472
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  708511 aaaaccatatccacccaatcacccaacccaacctactttt 708472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 745723 - 745684
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  745723 aaaaccatatccacccaatcacccaacccaacctactttt 745684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 869618 - 869579
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  869618 aaaaccatatccacccaatcacccaacccaacctactttt 869579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 37781363 - 37781410
Alignment:
Q  67 ttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaa 114  Q
    |||| |||||||| ||||| ||||| ||||||||||||||||||||||    
T  37781363 ttataatcaaaacctttgtcattctccttcctccctatgaaaatgaaa 37781410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 37781231 - 37781272
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||  ||||||||||||||||||| ||||||    
T  37781231 attttcaatatagatgatgtgttgtgtcaattttagaaatta 37781272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 39919001 - 39919042
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||  ||||||||||||||||||| ||||||    
T  39919001 attttcaatatagatgatgtgttgtgtcaattttagaaatta 39919042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 39919141 - 39919181
Alignment:
Q  74 caaaacatttgttattcttcttcctccctatgaaaatgaaa 114  Q
    |||||| ||||| ||||| ||||||||||||||||||||||    
T  39919141 caaaacctttgtcattctccttcctccctatgaaaatgaaa 39919181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 29289654 - 29289488
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29289654 attttcaatatagaggatgtgttgtgttaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 29289555  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  29289554 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccagttttacccaaaacccatta 29289488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 9888957 - 9888791
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9888957 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 9888858  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  9888857 aaaatttggaaattattggataagttggtttattggatatgggtccggttttacccaaaacccatta 9888791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 16049109 - 16049275
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  16049109 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttcatccctatgaaaatgaaatt 16049208  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  16049209 aaaatttgaaaattattgtgtaagttggtttattgggtatgggtccagttttacccaaaacccatta 16049275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 23928114 - 23927955
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23928114 attttcaatatagaggatgtggtgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctgtgaaaatgaaatt 23928015  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaa 176  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23928014 aaaatttggaaattattgggtaagttggtttattgggtatgggttcggttttacccaaaa 23927955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 26363209 - 26363307
Alignment:
Q  81 tttgttattcttcttcctccctatgaaaatgaaattaaaatt-tgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacc 178  Q
    ||||||||||| |||||||||||||||||||||| ||||| | |||| ||||||||||||||  ||||||||||| |||||  ||||||||||||||||    
T  26363209 tttgttattctccttcctccctatgaaaatgaaaataaaaatatgaacattattgggtaagtgagtttattgggtctgggtatggttttacccaaaacc 26363307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 10540600 - 10540704
Alignment:
Q  81 tttgttattcttcttcctccctatgaaaatgaaatt-------aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttaccca 173  Q
    ||||||||||| |||||||||||||||||||||| |       ||||| |||| |||||||||||||| |||||||||||| |||||  |||||||||||    
T  10540600 tttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttattgggtctgggtatggttttaccca 10540699  T
Q  174 aaacc 178  Q
    |||||    
T  10540700 aaacc 10540704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 35667459 - 35667358
Alignment:
Q  81 tttgttattcttcttcctccctatgaaaatgaaatt----aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaa 176  Q
    ||||||||||| ||||||||||||| |||||||| |    ||||  |||| |||||||||||||| |||||||||||| |||||  ||||||||||||||    
T  35667459 tttgttattctccttcctccctatgtaaatgaaaatgaaaaaaaaatgaacattattgggtaagtgggtttattgggtttgggtttggttttacccaaaa 35667360  T
Q  177 cc 178  Q
    ||    
T  35667359 cc 35667358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 14634662 - 14634701
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  14634662 aaaaccatatccacccaattatccaacccaacccactttt 14634701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 23927924 - 23927885
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  23927924 aaaaccatatccacccaatcacccaacccaacccactttt 23927885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 35667328 - 35667289
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  35667328 aaaaccatatccacccaatcacccaacccaacccactttt 35667289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 40484810 - 40484876
Alignment:
Q  112 aaattaaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacc 178  Q
    |||| ||||| |||| |||||||||||||| |||||||||||| || |||  |||||||||||||||    
T  40484810 aaataaaaatatgaatattattgggtaagtaggtttattgggtttgagtctagttttacccaaaacc 40484876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 10540460 - 10540501
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  10540460 attttcaatatagaggatgtgttgtgtcaattttaaaaatta 10540501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 35667599 - 35667558
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  35667599 attttcaatatagaggatgtgttgtgtcaattttagaaatta 35667558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 9888767 - 9888728
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  9888767 aaaaccatatccacccaatcacccaacccaacctactttt 9888728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 16049300 - 16049339
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  16049300 aaaaccatatccacccaatcacccaatccaacccactttt 16049339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 26363337 - 26363376
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  26363337 aaaaccatatccacccaattacccaacccaacccactttt 26363376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 29289462 - 29289423
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  29289462 aaaaccatattcacccaatcacccaacccaacccactttt 29289423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 34696857 - 34696959
Alignment:
Q  74 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatt-tgaaaattattgggtaagttggtttattgggtatgggtccggttttaccc 172  Q
    |||||| ||||||||||| |||||||  | ||||||||||| ||||| | | || ||||||||||||||  ||||||||| | ||| || ||||||||||    
T  34696857 caaaacctttgttattctccttcctct-tgtgaaaatgaaaataaaaatattaacattattgggtaagtgagtttattggatttggatctggttttaccc 34696955  T
Q  173 aaaa 176  Q
    ||||    
T  34696956 aaaa 34696959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 41359370 - 41359471
Alignment:
Q  84 gttattcttcttcctccctatgaaaatgaaattaaaatt-------tgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaa 176  Q
    ||||||||  ||||||||||||||||||||| ||||| |       |||| ||||| ||| || | ||||||||||||||| ||| ||||||||||||||    
T  41359370 gttattctctttcctccctatgaaaatgaaaataaaaatgtaaatatgaatattatcgggaaaatgggtttattgggtatgagtctggttttacccaaaa 41359469  T
Q  177 cc 178  Q
    ||    
T  41359470 cc 41359471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 14634521 - 14634629
Alignment:
Q  75 aaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatt-------tgaaaattattgggtaagttggtttattgggtatgggtccggttt 167  Q
    ||||| |||||| |||| ||||||||| |||||||||||| ||||| |       |||| ||| |||||||||| |||||||||||| || |||  ||||    
T  14634521 aaaacctttgttcttctccttcctccccatgaaaatgaaaataaaaataaaaatatgaatattgttgggtaagtgggtttattgggtttgagtctagttt 14634620  T
Q  168 tacccaaaa 176  Q
    |||||||||    
T  14634621 tacccaaaa 14634629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 40484669 - 40484731
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaac 79  Q
    ||||||||||||||| ||||||| ||||||||||| |||||| |||  |||||| | ||||||    
T  40484669 attttcaatatagaggatgtgttatgtcaattttagaaattagacttgatttataaccaaaac 40484731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 40484906 - 40484940
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaaccca 242  Q
    ||||||||||||||||||||| |||||||||||||    
T  40484906 aaaaccatatccacccaatcacccaacccaaccca 40484940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 22416880 - 22417046
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22416880 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 22416979  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22416980 aaaatttggaaattattgagtaagttggtttattgggtatgggtccggttttacccaaaacccatta 22417046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 34899601 - 34899767
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899601 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 34899700  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  34899701 aaaatttgaaaattattgggtaagttggtttattgggtatgagtccagttttacccaaaacccatta 34899767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 30357144 - 30356978
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30357144 attttcaatatagaggatgtgttgtgtcaatcttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 30357045  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  30357044 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccagttttactcaaaacccatta 30356978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 37575767 - 37575601
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37575767 attttcaatatagaggatgtgttgtgtcaattttaaaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 37575668  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  37575667 aaaatttggaaattattgggtaagttggttaattgagtatgggtccggttttacccaaaacccatta 37575601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 17474055 - 17474212
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    |||||||||| |||| |||| |||||||||||||| |||||| |||  |||||||| ||| || ||||||||||| |||||||||||||||||||| | |    
T  17474055 attttcaatacagaggatgtcttgtgtcaattttagaaattagacttgatttatgaccaagacctttgttattctccttcctccctatgaaaatgataat 17474154  T
Q  117 ---aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacc 171  Q
       |||||  ||| |||||||||||||| |||||||||||| ||||||  ||||||||    
T  17474155 aaaaaaatacgaacattattgggtaagtgggtttattgggtttgggtctagttttacc 17474212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 16749712 - 16749784
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttatt 89  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| | |||| |||||||||    
T  16749712 attttcaatatagagaatgtgttgtgtcaattttagaaattagacttaatttatgacccaaacctttgttatt 16749784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 8371561 - 8371459
Alignment:
Q  81 tttgttattcttcttcctccctatgaaaatgaaatt-----aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaa 175  Q
    ||||||||||| |||||||||||||||||||||| |     ||||  | || |||||||||||||| |||||||||||| |||||  |||||||||||||    
T  8371561 tttgttattctccttcctccctatgaaaatgaaaatgaaaaaaaaaataaacattattgggtaagtgggtttattgggtttgggtttggttttacccaaa 8371462  T
Q  176 acc 178  Q
    |||    
T  8371461 acc 8371459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 8423419 - 8423317
Alignment:
Q  81 tttgttattcttcttcctccctatgaaaatgaaatt-----aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaa 175  Q
    ||||||||||| |||||||||||||||||||||| |     ||||  | || |||||||||||||| |||||||||||| |||||  |||||||||||||    
T  8423419 tttgttattctccttcctccctatgaaaatgaaaatgaaaaaaaaaataaacattattgggtaagtgggtttattgggtttgggtttggttttacccaaa 8423320  T
Q  176 acc 178  Q
    |||    
T  8423319 acc 8423317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 27451259 - 27451155
Alignment:
Q  81 tttgttattcttcttcctccctatgaaaatgaaatt-------aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttaccca 173  Q
    ||||||||||| |||||||| ||||||||||||| |       ||||| |||| |||||||||||||| |||||||| ||| |||||| ||||||||||     
T  27451259 tttgttattctccttcctccgtatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttatttggtttgggtctggttttacccc 27451160  T
Q  174 aaacc 178  Q
    |||||    
T  27451159 aaacc 27451155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 8423287 - 8423248
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  8423287 aaaaccatatccacccaatcacccaacccaacccactttt 8423248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 27451403 - 27451364
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaat 56  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  27451403 attttcaatatagagaatgtgttgtgtcaattttagaaat 27451364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 8423559 - 8423518
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  8423559 attttcaatatagaggatgtgttgtgtcaattttagaaatta 8423518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 40332975 - 40333035
Alignment:
Q  24 atatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttg 84  Q
    ||||||||||| | |||||||||||||  ||||||||||  ||||||||||||||| ||||    
T  40332975 atatagagaatatcttgtgtcaattttgaaaattaaacttgatttatgatcaaaacctttg 40333035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 8371429 - 8371390
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  8371429 aaaatcatatccacccaatcacccaacccaacccactttt 8371390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 22417071 - 22417110
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  22417071 aaaaccatatccactcaatcacccaacccaacccactttt 22417110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 30356953 - 30356914
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  30356953 aaaaccatatccccccaatcacccaacccaacccactttt 30356914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 34899792 - 34899831
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  34899792 aaaaccatatccacccaatcacccaacccaacccgctttt 34899831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 36107494 - 36107660
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36107494 attttcaatatagaggatgtgttatgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 36107593  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||    
T  36107594 aaaatttgaaaattattgggtaagttggtttattgggtatgggttcagttttacccaaaacccatta 36107660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 40210317 - 40210151
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40210317 attttcaatatagaggatatgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 40210218  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  40210217 aaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttatccaaaacccatta 40210151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 41987150 - 41987307
Alignment:
Q  19 tttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaa 118  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41987150 tttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcttccctatgaaaatgaaattaa 41987249  T
Q  119 aatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaa 176  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41987250 aatttgaaaattattgggtaagttggtttattgggtatgggtccagttttacccaaaa 41987307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 24954681 - 24954844
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  24954681 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattct---tcctccctatgaaaatgaaatt 24954777  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  24954778 aaaatttgaaaattattgggtaagttggtttattgggtatgggttcagttttacccaaaacctatta 24954844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 33438784 - 33438626
Alignment:
Q  25 tatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttg 124  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  33438784 tatagaggatgtgatgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattctttttcctccctatgaaaatgaaattaaaattta 33438685  T
Q  125 aaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  33438684 gaaattattgggtaagttggtttattgggtatgggtctggttttacccaaaacccatta 33438626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 178
Target Start/End: Original strand, 3937289 - 3937399
Alignment:
Q  75 aaaacatttgttattcttcttcctccctatgaaaatgaaatt-------aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttt 167  Q
    ||||||||||||||||| |||||||||||||||||||||| |       ||||| |||| |||||||||||||| ||||||||||||||| |||  ||||    
T  3937289 aaaacatttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttattgggtatgagtcttgttt 3937388  T
Q  168 tacccaaaacc 178  Q
    |||||||||||    
T  3937389 tacccaaaacc 3937399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 3407488 - 3407377
Alignment:
Q  74 caaaacatttgttattcttcttcctccctatgaaaatgaaatt-------aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggtt 166  Q
    |||||| ||||||||||| |||||||||||||||||||||| |       ||||| ||||||||||| | ||||| |||||||||||| |||||| ||||    
T  3407488 caaaacgtttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaaaattattcgataagtgggtttattgggtctgggtctggtt 3407389  T
Q  167 ttacccaaaacc 178  Q
    |||||| |||||    
T  3407388 ttaccccaaacc 3407377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 32538500 - 32538616
Alignment:
Q  74 caaaacatttgttattcttcttcctccctatgaaaatgaaa-------ttaaaatttgaaaattattgggtaagttggtttattgggtatgggtccggtt 166  Q
    |||||| ||||||||||| ||||||||||||||||||||||       | ||||| |||| ||||||||||||||  ||||||||||| |||||| | ||    
T  32538500 caaaacctttgttattctccttcctccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgggtctgatt 32538599  T
Q  167 ttacccaaaacctatta 183  Q
    ||||| |||||| ||||    
T  32538600 ttaccaaaaacccatta 32538616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 40210126 - 40210087
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40210126 aaaaccatatccacccaatcatccaacccaacccactttt 40210087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 3407620 - 3407579
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  3407620 attttcaatatagaggatgtgttgtgtcaattttagaaatta 3407579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 44959615 - 44959656
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  44959615 attttcaatatagaggatgtgttgtgtcaattttagaaatta 44959656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 25981398 - 25981478
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcc 97  Q
    |||||||||||||||||||  || ||||||||||| |||||| |||  |||||||| |||||  |||  ||||||||||||    
T  25981398 attttcaatatagagaatgctttttgtcaattttaaaaattagacttgatttatgaccaaaatcttttgtattcttcttcc 25981478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 24954869 - 24954908
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  24954869 aaaatcatatccacccaatcacccaacccaacccactttt 24954908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 28363460 - 28363499
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  28363460 aaaaccatatccacccaatcacccaacccgacccactttt 28363499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 33438601 - 33438562
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  33438601 aaaaccatatcaacccaatcacccaacccaacccactttt 33438562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 36107685 - 36107724
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  36107685 aaaaccatatccactcaatcatccaatccaacccactttt 36107724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 37632583 - 37632544
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  37632583 aaaaccatattcatccaatcatccaacccaacccactttt 37632544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 12512504 - 12512538
Alignment:
Q  213 catatccacccaatcatccaacccaacccactttt 247  Q
    |||||||| ||||||||||||||||||||||||||    
T  12512504 catatccatccaatcatccaacccaacccactttt 12512538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 32538416 - 32538457
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||    
T  32538416 attttcaatatagaggatgtgttatgtcaattttagaaatta 32538457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 37632802 - 37632761
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||    
T  37632802 attttcaatatagaggatgtgttatgtcaattttaaaaatta 37632761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 16279760 - 16279800
Alignment:
Q  74 caaaacatttgttattcttcttcctccctatgaaaatgaaa 114  Q
    |||||| ||||||||||| |||||||||| |||||||||||    
T  16279760 caaaacctttgttattctccttcctccctgtgaaaatgaaa 16279800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 28363360 - 28363412
Alignment:
Q  103 atgaaaatgaaattaaaatt-tgaaaattattgggtaagttggtttattgggt 154  Q
    |||||||||||| ||||| | |||| |||||||||||||| ||||||||||||    
T  28363360 atgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttattgggt 28363412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 23723266 - 23723432
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23723266 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 23723365  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  23723366 aaaatttggaaattattgggtaagttggtttattggatatgtgtccggttttacccaaaacccatta 23723432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 32951465 - 32951306
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32951465 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 32951366  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaa 176  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  32951365 aaaatttaaaaattattgggtaaattggtttattgggtatgagtccggttttacccaaaa 32951306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 42547434 - 42547600
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42547434 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 42547533  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||||||| |||||| ||||    
T  42547534 aaaatttgaaaattattgggtaagttggtttattgggtataagtccagttttacctaaaacccatta 42547600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 27925465 - 27925299
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27925465 atttttaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcttccctatgaaaatgaaatt 27925366  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  27925365 aaaatttgaaaattattgagtaagtttgtttattgggtatgggtccagttttacccaaaacccatta 27925299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 28044004 - 28044107
Alignment:
Q  74 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatt-tgaaaattattgggtaagttggtttattgggtatgggtccggttttaccc 172  Q
    |||||| ||||||||||| |||||||||| ||||||| ||| ||||| | |||| |||||||||||||| |||||||||||| |||||  ||||||||||    
T  28044004 caaaacctttgttattctacttcctccctgtgaaaataaaaataaaaatatgaacattattgggtaagtgggtttattgggtctgggtatggttttaccc 28044103  T
Q  173 aaaa 176  Q
    ||||    
T  28044104 aaaa 28044107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 890358 - 890319
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  890358 aaaaccatatccacccaatcatccaacccaacccactttt 890319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 43342617 - 43342515
Alignment:
Q  83 tgttattcttcttcctccctatgaaaatgaaatt-------aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaa 175  Q
    ||||||||| |||||||||||||||||||||| |       ||||| |||| |||||||||||||| |||||||| ||| | |||   ||||||||||||    
T  43342617 tgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttattaggtctaggtatagttttacccaaa 43342518  T
Q  176 acc 178  Q
    |||    
T  43342517 acc 43342515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 890493 - 890388
Alignment:
Q  81 tttgttattcttcttcctccctatgaaaatgaaatt-------aaaatt-tgaaaattattgggtaagttggtttattgggtatgggtccggttttaccc 172  Q
    ||||||||||| |||||||||||||||||||||| |       |||||| |||| ||||||||||||||  ||||||||||| || ||| | ||||| ||    
T  890493 tttgttattctccttcctccctatgaaaatgaaaatgaaaaaaaaaattatgaatattattgggtaagtgagtttattgggtttgagtctgattttatcc 890394  T
Q  173 aaaacc 178  Q
    ||||||    
T  890393 aaaacc 890388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 23723456 - 23723495
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  23723456 aaaaccatatccacccaatcacccaacccaacctactttt 23723495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 28044139 - 28044178
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  28044139 aaaaccatattcacccaatcacccaacccaacccactttt 28044178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 32951274 - 32951235
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  32951274 aaaaccatatccatccaatcacccaacccaacccactttt 32951235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 54578399 - 54578360
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  54578399 aaaaccatatctacccaatcatccaacccaatccactttt 54578360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 890633 - 890592
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||    
T  890633 attttcaatatagaggatgtgctgtgtcaattttagaaatta 890592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 28043870 - 28043911
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| || |||||||||||||||| ||||||    
T  28043870 attttcaatatagaggatatgttgtgtcaattttaaaaatta 28043911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 34950529 - 34950590
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaa 78  Q
    |||||||||||||||||||| || || |||||||  ||||||||||  |||||||| |||||    
T  34950529 attttcaatatagagaatgtcttttggcaattttgaaaattaaacttgatttatgaccaaaa 34950590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 43342709 - 43342676
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaatttt 50  Q
    |||||||||||||||||| |||||||||||||||    
T  43342709 attttcaatatagagaatttgttgtgtcaatttt 43342676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 397271 - 397437
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  397271 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcttccctatgaaaatgaaatt 397370  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||| ||||    
T  397371 aaaatttgaaaattattgggtaagttggtttattggatatgggtccaattttacccaaaacccatta 397437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 397462 - 397501
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  397462 aaaaccatatccacccaatcacccaatccaacccactttt 397501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 48432973 - 48433139
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48432973 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 48433072  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    ||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||||||| ||||    
T  48433073 aaaatttaaaaattattgggtaagttggtttattggatatgagtccagttttacccaaaacccatta 48433139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 4774260 - 4774426
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4774260 attttcaatatagaggatgtgttttgtcaattttaggaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 4774359  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||    
T  4774360 aaaatttggaaattattgggtaagttggtttattgagtatgggttcggttttacccaaaacccatta 4774426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 39085161 - 39085327
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39085161 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 39085260  T
Q  117 aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
    |||||||  ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  39085261 aaaatttagaaattcttgagtaagttggtttattgggtatgggttcggttttacccaaaacccatta 39085327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 12025998 - 12026165
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatg-aaat 115  Q
    |||||||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  12025998 attttcaatatagaggctgtgttatgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttctttctccctatgaaaatgaaaat 12026097  T
Q  116 taaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacctatta 183  Q
     |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  12026098 gaaaatttggaaattattgggtaagttggtttattgggtataggttcggttttacccaaaacccatta 12026165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 53592786 - 53592890
Alignment:
Q  81 tttgttattcttcttcctccctatgaaaatgaaatt-------aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttaccca 173  Q
    ||||||||||| |||||||||||||||||||||| |       ||||| |||| |||||||||||||| |||||||||||| |||||  |||||||||||    
T  53592786 tttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttattgggtctgggtatggttttaccca 53592885  T
Q  174 aaacc 178  Q
    |||||    
T  53592886 aaacc 53592890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 39085353 - 39085392
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  39085353 aaaaccatatccacccaatcacccaacccaacccactttt 39085392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 48433164 - 48433203
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  48433164 aaaatcatatccacccaatcatccaacccaacccactttt 48433203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 15042325 - 15042187
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt 116  Q
    |||||||||||||||||||| || ||||||||||  |||||| |||  |||| ||| |||||  |||  |||||| |||| |||| |||||||| ||| |    
T  15042325 attttcaatatagagaatgtcttttgtcaattttgaaaattagacttgatttgtgaccaaaatcttttgtattctccttcttcccaatgaaaataaaaat 15042226  T
Q  117 aaaatt-tgaaaattattgggtaagttggtttattgggt 154  Q
    |||||| |    |||||||||||||| |||||| |||||    
T  15042225 aaaattgttggcattattgggtaagtgggtttactgggt 15042187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 26829439 - 26829532
Alignment:
Q  26 atagagaatgtgttgtgtcaattttataaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 120  Q
    ||||||||| | |||||||||||||  |||||| | ||| |||||||||||||| |||| |||||| |||| | ||||||||||| ||| |||||    
T  26829439 atagagaatatcttgtgtcaattttggaaattagattaa-tttatgatcaaaacctttgctattctccttctttcctatgaaaataaaaataaaa 26829532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 53592924 - 53592958
Alignment:
Q  213 catatccacccaatcatccaacccaacccactttt 247  Q
    |||||||||||||||||||||||||||||||||||    
T  53592924 catatccacccaatcatccaacccaacccactttt 53592958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 45222756 - 45222797
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  45222756 attttcaatatagagaatgtgttatgtcaattttagaaatta 45222797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 52498645 - 52498604
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  52498645 attttcaatatagaggatgtgttgtgtcaattttagaaatta 52498604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 53592646 - 53592687
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  53592646 attttcaatatagaggatgtgttgtgtcaattttagaaatta 53592687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 52498506 - 52498428
Alignment:
Q  81 tttgttattcttcttcctccctatgaaaatg-------aaattaaaatttgaaaattattgggtaagttggtttattgg 152  Q
    ||||||||||| |||||||||||||||||||       |||||||||| |||| |||||||| ||||| ||||||||||    
T  52498506 tttgttattctccttcctccctatgaaaatgaaaattaaaattaaaatatgaacattattggataagtgggtttattgg 52498428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 12026190 - 12026229
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  12026190 aaaaccatatccatccaatcacccaacccaacccactttt 12026229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 28700253 - 28700320
Alignment:
Q  112 aaattaaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacct 179  Q
    |||||||||||||   |||||| ||||||| |||||||| |||||| ||| |||||||||| ||||||    
T  28700253 aaattaaaatttgggtattattaggtaagtgggtttatttggtatgagtctggttttacccgaaacct 28700320  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 52497483 - 52497444
Alignment:
Q  208 aaaaccatatccacccaatcatccaacccaacccactttt 247  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  52497483 aaaacgatatccacccaatcatccaatccaacccactttt 52497444  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 14609528 - 14609423
Alignment:
Q  67 ttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaatt-aaaatttgaaaattattgggtaagttggtttattgggtatgggtccggt 165  Q
    |||||| |||||  |||| |||||| |||| ||| ||||||||| ||| | ||||| |  | |||||||||||||| |||||||| |||||| ||| |||    
T  14609528 ttatgaccaaaatttttggtattctccttcttccatatgaaaataaaaatcaaaatgttgacattattgggtaagtgggtttattaggtatgagtctggt 14609429  T
Q  166 tttacc 171  Q
    ||||||    
T  14609428 tttacc 14609423  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 26812 - 26853
Alignment:
Q  17 attttcaatatagagaatgtgttgtgtcaattttataaatta 58  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||    
T  26812 attttaaatatagaggatgtgttgtgtcaattttagaaatta 26853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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