View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1985_low_4 (Length: 221)
Name: NF1985_low_4
Description: NF1985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1985_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 42135426 - 42135619
Alignment:
| Q |
10 |
gtgagatgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgtt |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42135426 |
gtgaaatgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgtt |
42135525 |
T |
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| Q |
110 |
acttcttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtccttggt |
203 |
Q |
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| T |
42135526 |
acttcttgtaaaaaatcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactgtaacacattttcgcgtggtccttggt |
42135619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 42144564 - 42144690
Alignment:
| Q |
15 |
atgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgttacttc |
114 |
Q |
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|||||| |||| ||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||| ||||||||||| ||||| |||||||||||||| |
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| T |
42144564 |
atgaatgaaagaaatcaacaaattcaggaactgaaacatatctataaggttcatctcttttaaaccagtattgttgttgatctttcttggatgttacttc |
42144663 |
T |
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| Q |
115 |
ttgtaaaaagtcagctactccttttct |
141 |
Q |
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| T |
42144664 |
ttgtaagaaatcagcaacaccttttct |
42144690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 42175683 - 42175797
Alignment:
| Q |
15 |
atgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgttacttc |
114 |
Q |
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|||||| |||| | |||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
42175683 |
atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc |
42175782 |
T |
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| Q |
115 |
ttgtaaaaagtcagc |
129 |
Q |
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| T |
42175783 |
ttgtaagaaatcagc |
42175797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 42156511 - 42156625
Alignment:
| Q |
15 |
atgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgttacttc |
114 |
Q |
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|||||| |||| ||||||||||||||| ||||||||||||| ||||||||| |||| || ||||||| ||||||||||| ||||| |||||||||||||| |
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| T |
42156511 |
atgaatgaaagaaatcaacaaattcaggaactgaaacatatctataaggttcatctattttaaaccagtattgttgttgatctttcttggatgttacttc |
42156610 |
T |
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| Q |
115 |
ttgtaaaaagtcagc |
129 |
Q |
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| T |
42156611 |
ttgtaagaaatcagc |
42156625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 44225331 - 44225407
Alignment:
| Q |
98 |
tttttggatgttacttcttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaa |
174 |
Q |
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|||||||| ||||||||||| | ||||||||| | ||||| ||| ||||||||||||||| || ||||||||||| |
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| T |
44225331 |
tttttggaagttacttcttgaagaaagtcagcagcacctttcctttcaggacatttgaaacccattgtttcaaaaaa |
44225407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 44236145 - 44236221
Alignment:
| Q |
98 |
tttttggatgttacttcttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaa |
174 |
Q |
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| T |
44236145 |
tttttggaagttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaa |
44236221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 44213170 - 44213231
Alignment:
| Q |
98 |
tttttggatgttacttcttgtaaaaagtcagctactccttttcttggaggacatttgaaacc |
159 |
Q |
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|||||||||||||||||||| | ||| ||||| || ||||| ||| ||||||||||||||| |
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| T |
44213170 |
tttttggatgttacttcttgaagaaaatcagcaacacctttcctttcaggacatttgaaacc |
44213231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 2163683 - 2163775
Alignment:
| Q |
109 |
tacttcttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtccttg |
201 |
Q |
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|||||||||||| || ||||| |||||||||||| |||||| ||||| || || | || |||||||||| |||||||| | ||||||||| |
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| T |
2163683 |
tacttcttgtaagaaatcagcaactccttttctttcaggacacttgaatcccattgactcgaaaaactctagtacattttctcttggtccttg |
2163775 |
T |
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