View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_high_11 (Length: 493)
Name: NF19860_high_11
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 12 - 477
Target Start/End: Original strand, 34463114 - 34463580
Alignment:
| Q |
12 |
gaatatgggctcaacttgtgaacaactcaggtaaccaatgagttacatcaattgcaccaaattgatgattttcattatatatagtattcaaatataagtt |
111 |
Q |
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| T |
34463114 |
gaatatgggctcaacttgtgaacaactcaggtaaccaatgagttacattaattgcaccaaattgatgattttcattatatatagtattcaaatataagtt |
34463213 |
T |
|
| Q |
112 |
--gtgtttcagggtttgaagctgcgggaacacgtacgccatcaaatattttcccttggaccataattggaaccgaatcatctgttaagctacagactgag |
209 |
Q |
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| T |
34463214 |
ttgtgtttcagggtttgaagctgcaggaacacgtacgccatcaaatattttcccttggaccataattggaacagaatcatctgttaagctacagactgag |
34463313 |
T |
|
| Q |
210 |
cttagttcttgctttgaacgcaataaggttgcattaagaatggatgtgttatgtgacaagtgccctcctgatggtgttggagtctctaacccaggttttt |
309 |
Q |
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| T |
34463314 |
cttagttcttgctttgaacgcaataaggttgcattaagaatggatgtgttatgtgacaagtgccctcctgatggtgttggagtctctaacccaggttttt |
34463413 |
T |
|
| Q |
310 |
ggggcatggtgagaattaacaaaaaagaaaattatgcaaactcctacttgcaataattaacgttatatcacatttgggacatcattgttatttttagtcg |
409 |
Q |
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| T |
34463414 |
ggggcatggtgagaattaacaaaaaa-aaaattatgcaaactcctacttgcaataattaacgttatatcacatttgggacatcattgttatttttagtcg |
34463512 |
T |
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| Q |
410 |
gggcttcaaccctcaactttttaacttattaatttctttgacacttgaatcaaactagttgaggtaac |
477 |
Q |
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| T |
34463513 |
gggcttgaaccctcaactttttaacttattaatttctttgacacttgaatcaaactagttgaggtaac |
34463580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 61 - 388
Target Start/End: Original strand, 34446889 - 34447215
Alignment:
| Q |
61 |
aattgcaccaaattgatgattttcattatatatagtattcaaatat-aagttgtgtttcagggtttgaagctgcgggaacacgtacgccatcaaatattt |
159 |
Q |
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| T |
34446889 |
aattgcaccaaattgatgattttgattatgtatagtgttcaaatatgaatttgtgtttcagggtttgaagctggggggaaaaagatgccatcaaattttg |
34446988 |
T |
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| Q |
160 |
tcccttggaccataattggaaccgaatcatctgttaagctacagactgagcttagttcttgctttgaacgcaataaggttgcattaagaatggatgtgtt |
259 |
Q |
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| T |
34446989 |
caccttggaccatagttggaacagaaacaactattcatgtagaaactgagcttagttcttgctttgaacgcaataaggttgcattgagaatggatgtgct |
34447088 |
T |
|
| Q |
260 |
atgtgacaagtgccctcctgatggtgttggagtctctaacccaggtttttggggcatggtgagaattaacaaaaaagaaaattatgcaaactcctacttg |
359 |
Q |
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| T |
34447089 |
atgtgataattgtccatttgatggtgttggaatttctaacccaggttattggggcatggtgagaa-taacaaaaaa-atactaatgcatactcctacttg |
34447186 |
T |
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| Q |
360 |
caataattaacgttatatcacatttggga |
388 |
Q |
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| T |
34447187 |
aaataattaaggttgtgtcacatttggga |
34447215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 45 - 335
Target Start/End: Original strand, 34435882 - 34436175
Alignment:
| Q |
45 |
accaatgagttacatcaattgcaccaaattgatgattttcattatatatagtattcaaatataag---ttgtgtttcagggtttgaagctgcgggaacac |
141 |
Q |
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|||||| ||| |||| |||| ||| ||||||||||||| ||||| ||||| |||||||||| | |||||||| |||||||||||| | ||||| | |
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| T |
34435882 |
accaatcagtcacattaatttcacacaattgatgattttaattatgcatagtgttcaaatatatgaatttgtgttttagggtttgaagccggaggaactc |
34435981 |
T |
|
| Q |
142 |
gtacgccatcaaatattttcccttggaccataattggaaccgaatcatctgttaagctacagactgagcttagttcttgctttgaacgcaataaggttgc |
241 |
Q |
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| T |
34435982 |
aggttccatcaaattttgacccttgggccatagttggaacagaagcagatattcatgtagtgactgagcttagttctagctttgaacgcaataaggttgc |
34436081 |
T |
|
| Q |
242 |
attaagaatggatgtgttatgtgacaagtgccctcctgatggtgttggagtctctaacccaggtttttggggcatggtgagaattaacaaaaaa |
335 |
Q |
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| T |
34436082 |
attgagaattgatgtgctatgtgataattgcccagttgatggtgttggaatttctaacccaggttttaagggcatggtaagaattaaaaaaaaa |
34436175 |
T |
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