View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19860_high_14 (Length: 478)
Name: NF19860_high_14
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 3808964 - 3808686
Alignment:
| Q |
10 |
tcgaagaatatattacaagtaagacactgacacaattcctattttatgaatatccatatcataaaataaaatatgttatgtcatgtcggtatgtttgaaa |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3808964 |
tcgaagactatattacaagtaagacactgacacatttcctattttatgaatatccatatgataaaataaaatatgttatgtc-----ggtatgtttgaaa |
3808870 |
T |
|
| Q |
110 |
ttttggaaaatcctagtaatattgaattgaaaggatcaagtactttgacaactagctaatt-------------ggtgataacttcccaagtggaagact |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3808869 |
ttttggaaaatcctagtaatattgaattgaaaggatcaggtactttggcaactagctaattggtgtcttgacttggtgataacttcccaagtggaagact |
3808770 |
T |
|
| Q |
197 |
agggatacaaggcctccagcttctgccatttggtagacaaatgacaaataaaatggataataaatggtcaaattaagtaatcaa |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3808769 |
agggatacaaggcctccagcttctgccatttggtagacaaatgacaaataaaatggataataaatggtcaaattaagtaatcaa |
3808686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 282 - 461
Target Start/End: Complemental strand, 3808650 - 3808469
Alignment:
| Q |
282 |
aaatgtactagatatttttgtttttcgacaggaacaaaa--cacgcgttcaaattctaacacaacgtgctttcgtattgaaagtcagctcaaacaaaaag |
379 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3808650 |
aaatgtactatatatttttgtttttcgacaggaacaaaaaacacgcgttcaagttctaacacaacgtgctttcgtattgaaagtcagctcaaacaaaaag |
3808551 |
T |
|
| Q |
380 |
taaagacaaacacaaactaacagtcaaatacttgtactaataaagtgaaaacggatattctcccaccaattaacccaaaaaa |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
3808550 |
taaagacaaacacaaactaacagtcaaatacttgtactaataaagtgaaaacggatattctctcaccaattaaccccaaaaa |
3808469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University