View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_high_16 (Length: 450)
Name: NF19860_high_16
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 77 - 432
Target Start/End: Complemental strand, 925287 - 924928
Alignment:
| Q |
77 |
attcacacaaaacaacaaaatcacttcctatctatgatttttcaatatctcatgaaatctattggataatttttcaactatatgcatatatcaaatatta |
176 |
Q |
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| T |
925287 |
attcacacaaaacaacaaaatcacttcctatctatgatttttcaatatctcatgaaatctattggataatttttcaactatatgcatatatcaaatatta |
925188 |
T |
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| Q |
177 |
aaagctttttaactatcattatagccaaaacaaattcattacttgtccactaaatatgatgtataactcttgtaattttatttttaaaacaaatcagggt |
276 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
925187 |
aaagctttttaactatcattaga-ccaaaacaaattcattacttgtctactaaatatgatgtataactcttgtaattttatttttaaaacaaatcagggt |
925089 |
T |
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| Q |
277 |
aatttaataatttccatatcaaatattttcttctagtgggtcgcggccctccctctctgttcatgagaaactccatcccttgattagagttgtctcttga |
376 |
Q |
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| T |
925088 |
aatttaataatttccatatgaaatattttcttctatcgggtcgcggccctcc--ctctgttcatgagaaactccatcccttgattagagttgtctcttga |
924991 |
T |
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| Q |
377 |
taaactaaatttaaaagtcgtg-------tagatcatggtaataagagagaagacaccaaatt |
432 |
Q |
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| T |
924990 |
taaactaaatttaaaagtcgtgttattcatagatcatggtaataagagagaagacaccaaatt |
924928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 925377 - 925329
Alignment:
| Q |
29 |
aatggtgatgccttatccattctgtttctgctctctacaaacccaccca |
77 |
Q |
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| T |
925377 |
aatggtgatgccttatccattctgtttctgctctctacaaacccaccca |
925329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 927009 - 926968
Alignment:
| Q |
105 |
tatctatgatttttcaatatctcatgaaatctattggataat |
146 |
Q |
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| T |
927009 |
tatctataatttttcaatatctcatgaaatccattggataat |
926968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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