View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19860_high_17 (Length: 443)

Name: NF19860_high_17
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19860_high_17
NF19860_high_17
[»] chr1 (2 HSPs)
chr1 (7-427)||(52082617-52083037)
chr1 (7-427)||(52092813-52093233)
[»] chr5 (3 HSPs)
chr5 (7-91)||(41889533-41889617)
chr5 (7-68)||(32267511-32267572)
chr5 (7-63)||(41901542-41901598)
[»] chr8 (6 HSPs)
chr8 (7-68)||(18315275-18315336)
chr8 (7-68)||(27922544-27922605)
chr8 (26-68)||(17636403-17636445)
chr8 (26-92)||(28246273-28246339)
chr8 (26-66)||(17628018-17628058)
chr8 (26-66)||(21235613-21235653)
[»] chr2 (2 HSPs)
chr2 (245-307)||(32785538-32785600)
chr2 (7-68)||(32785774-32785835)
[»] chr4 (6 HSPs)
chr4 (7-68)||(7307896-7307957)
chr4 (8-68)||(8187093-8187153)
chr4 (14-49)||(1754554-1754589)
chr4 (7-81)||(532225-532299)
chr4 (112-158)||(1754624-1754670)
chr4 (251-312)||(547193-547254)
[»] chr3 (9 HSPs)
chr3 (245-286)||(33708804-33708845)
chr3 (7-64)||(33714861-33714918)
chr3 (245-312)||(514486-514553)
chr3 (251-286)||(33396785-33396820)
chr3 (251-286)||(37580607-37580642)
chr3 (251-285)||(33093715-33093749)
chr3 (27-68)||(51120895-51120936)
chr3 (251-283)||(36810812-36810844)
chr3 (260-312)||(51764201-51764253)
[»] chr7 (3 HSPs)
chr7 (251-303)||(10167444-10167496)
chr7 (251-303)||(10169900-10169952)
chr7 (251-303)||(10177425-10177477)
[»] chr6 (4 HSPs)
chr6 (19-69)||(6423265-6423315)
chr6 (26-91)||(11936254-11936319)
chr6 (26-91)||(11948234-11948299)
chr6 (26-66)||(12102321-12102361)


Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 7 - 427
Target Start/End: Original strand, 52082617 - 52083037
Alignment:
Q  7 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaagatctcatttccaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52082617 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaagatctcatgtccaa 52082716  T
Q  107 gtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaatatctcaggtcaagcacttgcaagtttggaaaaaga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082717 gtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaatatctcaggtcaagcacttgcaagtttggaaaaaga 52082816  T
Q  207 gaagccaacattttgacgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattag 306  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082817 gaagccaacattttgatgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattag 52082916  T
Q  307 agttcttatcacaaaactttccaatatcactgtattccattatgatcttgctgaggaaaggacagttcctaactagtgacagcaaggttaattcagtgat 406  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082917 agttcttatcacaaaactttccaatatcactgcattccattatgatcttgctgaggaaaggacagttcctaactagtgacagcaaggttaattcagtgat 52083016  T
Q  407 attacaatggctaaggtttat 427  Q
    |||||||||||||||||||||    
T  52083017 attacaatggctaaggtttat 52083037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 7 - 427
Target Start/End: Original strand, 52092813 - 52093233
Alignment:
Q  7 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaagatctcatttccaa 106  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||  | |||    
T  52092813 catcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcaatgttgaccaagatctcaagttcaa 52092912  T
Q  107 gtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaata------tctcaggtcaagcacttgcaagtttgga 200  Q
     ||| ||||||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||      ||||||||||||| | |||| ||||||     
T  52092913 atgagtaattttacaacatcttaaaacttcaacaataccttcggatatgcaatagcaatggcaatatctcattctcaggtcaagcccctgcaggtttggg 52093012  T
Q  201 aaaagagaagccaacattttgacgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaag 300  Q
    |||||||||| ||||||||||| ||||||||| ||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||     
T  52093013 aaaagagaaggcaacattttgatgctttcatttttcaaccgtggattgcctgccaaatggagagacttcacttgagggtatacaacaaagtccatcaaac 52093112  T
Q  301 aattagagttcttatcacaaaactttccaatatcactgtattccattatgatcttgctgaggaaaggacagttcctaactagtgacagcaaggttaattc 400  Q
    ||||| | |||||||||||||||||||||||| |||         || |||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  52093113 aattacaattcttatcacaaaactttccaataccac---------ttctgatctcgctgaggaaaggacagttcctaactagtgacaccaaggttaattc 52093203  T
Q  401 agtgatat---tacaatggctaaggtttat 427  Q
    ||||||||   ||||| |||||||||||||    
T  52093204 agtgatattggtacaagggctaaggtttat 52093233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 41889617 - 41889533
Alignment:
Q  7 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaaca 91  Q
    ||||||||| |||||| | ||| |||||||||||||||||||||| ||||| ||||||||||  |||||| |||| | |||||||    
T  41889617 catcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaaca 41889533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 32267511 - 32267572
Alignment:
Q  7 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 68  Q
    ||||||||| | |||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  32267511 catcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 41901598 - 41901542
Alignment:
Q  7 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagt 63  Q
    ||||||||| |||||| | |||||||||||||||||||| ||||| ||||| |||||    
T  41901598 catcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 18315336 - 18315275
Alignment:
Q  7 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 68  Q
    ||||||||| |||||| | |||||||||||||||||||| ||||| ||||| ||||||||||    
T  18315336 catcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcatt 18315275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 27922544 - 27922605
Alignment:
Q  7 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 68  Q
    |||||||||  ||||| | |||||||||||||||||||||||||| ||||| ||||||||||    
T  27922544 catcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 17636445 - 17636403
Alignment:
Q  26 tgacaagttcaacacctccaatttggaaacttgaaagttcatt 68  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  17636445 tgacaagttcaacacctccaatttgggaacttcaaagttcatt 17636403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 28246339 - 28246273
Alignment:
Q  26 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaa 92  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| ||||||||    
T  28246339 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaa 28246273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 17628058 - 17628018
Alignment:
Q  26 tgacaagttcaacacctccaatttggaaacttgaaagttca 66  Q
    |||||||||||||||||||||||| |||| || ||||||||    
T  17628058 tgacaagttcaacacctccaatttagaaagtttaaagttca 17628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 21235613 - 21235653
Alignment:
Q  26 tgacaagttcaacacctccaatttggaaacttgaaagttca 66  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  21235613 tgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 32785600 - 32785538
Alignment:
Q  245 attgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattaga 307  Q
    ||||||||||||||||||| |||| | |||||||  ||||||||| |||| ||||||||||||    
T  32785600 attgcgagccaaatggagaaactttaattgagggattacaacaaaatccatcaaagaattaga 32785538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 32785835 - 32785774
Alignment:
Q  7 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 68  Q
    ||||||||||| |||| | |||||||||||||||||| | ||||| | ||| ||||||||||    
T  32785835 catcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcatt 32785774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 7307896 - 7307957
Alignment:
Q  7 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 68  Q
    ||||||||| || ||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  7307896 catcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 8187153 - 8187093
Alignment:
Q  8 atcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 68  Q
    |||||||| | |||| | |||||||||||||||||||| |||||||| || ||||||||||    
T  8187153 atcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcatt 8187093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 1754554 - 1754589
Alignment:
Q  14 aatttttgtctttgacaagttcaacacctccaattt 49  Q
    |||||||||||| |||||||||||||||||||||||    
T  1754554 aatttttgtcttcgacaagttcaacacctccaattt 1754589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 532225 - 532299
Alignment:
Q  7 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattca 81  Q
    |||||||||| ||||| | |||||||||||||||||| |  ||||  |||| ||||||||||  |||||||||||    
T  532225 catcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattca 532299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 1754624 - 1754670
Alignment:
Q  112 taattttacaatatcttaaaacttcaacgataccgtcagatatgcaa 158  Q
    |||||||| || |||||||||||||||||||||| | ||||||||||    
T  1754624 taattttagaacatcttaaaacttcaacgatacctttagatatgcaa 1754670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 547193 - 547254
Alignment:
Q  251 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttct 312  Q
    |||||||||||||||||||| |||||||  ||||||||| |||   ||||||||||| ||||    
T  547193 agccaaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattct 547254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 33708845 - 33708804
Alignment:
Q  245 attgcgagccaaatggagagacttcacttgagggtatacaac 286  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  33708845 attgtgagccaaatggagagacttcacttgatggtatacaac 33708804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 33714918 - 33714861
Alignment:
Q  7 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 64  Q
    ||||||||||| |||  ||||||||||||| |||||||| ||||||||||| ||||||    
T  33714918 catcatcaattcttgagtttgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 514553 - 514486
Alignment:
Q  245 attgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttct 312  Q
    |||| ||||||||| |||||| || | ||||||||  ||||||||||||| ||||||||| |||||||    
T  514553 attgtgagccaaatagagagattttaattgagggttcacaacaaagtccaacaaagaattggagttct 514486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 33396785 - 33396820
Alignment:
Q  251 agccaaatggagagacttcacttgagggtatacaac 286  Q
    ||||||||||||||||||||||||| ||||||||||    
T  33396785 agccaaatggagagacttcacttgatggtatacaac 33396820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 37580642 - 37580607
Alignment:
Q  251 agccaaatggagagacttcacttgagggtatacaac 286  Q
    ||||||||||||||||||||||||| ||||||||||    
T  37580642 agccaaatggagagacttcacttgatggtatacaac 37580607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 285
Target Start/End: Complemental strand, 33093749 - 33093715
Alignment:
Q  251 agccaaatggagagacttcacttgagggtatacaa 285  Q
    ||||||||||||||||||||||||| |||||||||    
T  33093749 agccaaatggagagacttcacttgacggtatacaa 33093715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 51120936 - 51120895
Alignment:
Q  27 gacaagttcaacacctccaatttggaaacttgaaagttcatt 68  Q
    ||||||||||||||||||||||||  ||||| ||||||||||    
T  51120936 gacaagttcaacacctccaatttgagaacttcaaagttcatt 51120895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 36810844 - 36810812
Alignment:
Q  251 agccaaatggagagacttcacttgagggtatac 283  Q
    ||||||||||||||||||||||||| |||||||    
T  36810844 agccaaatggagagacttcacttgatggtatac 36810812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 51764253 - 51764201
Alignment:
Q  260 gagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttct 312  Q
    ||||||||| | ||||||||||||| ||||||||| |||||||| ||| ||||    
T  51764253 gagagactttaattgagggtatacaccaaagtccaccaaagaatcagaattct 51764201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 10167496 - 10167444
Alignment:
Q  251 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 303  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10167496 agccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10167444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 10169952 - 10169900
Alignment:
Q  251 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 303  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10169952 agccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10169900  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 10177477 - 10177425
Alignment:
Q  251 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 303  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10177477 agccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10177425  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 6423265 - 6423315
Alignment:
Q  19 ttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattg 69  Q
    |||| ||||||||||||||||||||||  |||| ||||| |||||||||||    
T  6423265 ttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattg 6423315  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 11936319 - 11936254
Alignment:
Q  26 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaaca 91  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| |||||||    
T  11936319 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaaca 11936254  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 11948299 - 11948234
Alignment:
Q  26 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaaca 91  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| |||||||    
T  11948299 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaaca 11948234  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 12102321 - 12102361
Alignment:
Q  26 tgacaagttcaacacctccaatttggaaacttgaaagttca 66  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  12102321 tgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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