View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19860_high_20 (Length: 424)

Name: NF19860_high_20
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19860_high_20
NF19860_high_20
[»] chr8 (4 HSPs)
chr8 (1-415)||(26392996-26393410)
chr8 (30-179)||(26391821-26391970)
chr8 (365-416)||(16290865-16290916)
chr8 (357-415)||(26657677-26657735)
[»] chr1 (8 HSPs)
chr1 (33-143)||(47691816-47691926)
chr1 (357-415)||(34528929-34528987)
chr1 (360-415)||(12629262-12629317)
chr1 (370-415)||(3833449-3833494)
chr1 (358-415)||(18332712-18332769)
chr1 (364-413)||(28016008-28016057)
chr1 (361-414)||(34879930-34879983)
chr1 (357-413)||(19054395-19054451)
[»] chr4 (3 HSPs)
chr4 (325-404)||(4936046-4936125)
chr4 (325-415)||(15159414-15159504)
chr4 (357-415)||(33040584-33040642)
[»] chr6 (6 HSPs)
chr6 (347-415)||(3056947-3057015)
chr6 (333-416)||(9344487-9344570)
chr6 (357-411)||(1110470-1110524)
chr6 (365-415)||(9351142-9351192)
chr6 (360-396)||(841317-841353)
chr6 (325-393)||(15050014-15050082)
[»] chr5 (2 HSPs)
chr5 (199-255)||(35333071-35333127)
chr5 (357-415)||(2259407-2259465)
[»] scaffold0009 (1 HSPs)
scaffold0009 (365-416)||(1512-1563)
[»] chr3 (2 HSPs)
chr3 (114-161)||(19973155-19973202)
chr3 (365-415)||(19826430-19826480)
[»] chr2 (2 HSPs)
chr2 (360-411)||(28948885-28948936)
chr2 (364-415)||(40926478-40926529)
[»] chr7 (2 HSPs)
chr7 (370-416)||(18270319-18270365)
chr7 (347-415)||(1537958-1538026)
[»] scaffold0356 (1 HSPs)
scaffold0356 (370-415)||(13735-13780)


Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 26392996 - 26393410
Alignment:
Q  1 acatattgtgctatattttcttggtagcaattactaatatcggttgttgtcattaccattaccacgccttctataaacactttctctccgaagaatacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26392996 acatattgtgctatattttcttggtagcaattactaatatcggttgttgtcatcaccattaccacgccttctataaacactttctctccgaagaatacat 26393095  T
Q  101 tgggttggacccagttattatccctcatcattagtgctataaaaactttatcttcaaaccaccccctacacaaacgcgcacgcgcatgcaagtgagtaca 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||    
T  26393096 tgggttggacccagttattacccctcatcattagtgctataaaaactttatcttcaaaccaccccctacacacacacgcacgtgcgtgcaagtgagtaca 26393195  T
Q  201 cacagtgcatgtatactttatattatttgtaaaaccaaacatattaatacgactatataatatataatatgctgacttagatgtcaaaaaacttaaatct 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  26393196 cacagtgcatgtatactttatattatttgtaaaatcaaacatattaatacgactatataatataaaatatgctgacctagatgtcaaaaaacttaaatct 26393295  T
Q  301 tcactaactttgtgtgacatggactttttaggtaagccaggagtcaggacagtcaacaagagaaaacaacgacatcccaactaagttgtcaccccgcgaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26393296 tcactaactttgtgtgacatggactttttaggtaagccaggagtcaggactgtcaacaagagaaaacaacgacatcccaactaagttgccaccccgcgaa 26393395  T
Q  401 acctccgtcctatgc 415  Q
    |||||| ||||||||    
T  26393396 acctccatcctatgc 26393410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 26391821 - 26391970
Alignment:
Q  30 attactaatatcggttgttgtcattaccattaccacgccttctataaacactttctctccgaagaatacattgggttggacccagttattatccctcatc 129  Q
    |||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  26391821 attactaatatcagtcgttgtcattaccattactacgccttctataaacactttctatccgaagaatacactgggttggacccagttattatccctcatc 26391920  T
Q  130 attagtgctataaaaactttatcttcaaaccaccccctacacaaacgcgc 179  Q
    |||||| || ||||| |||| |||| ||||||||| ||||||||||||||    
T  26391921 attagttctgtaaaatctttctcttgaaaccaccctctacacaaacgcgc 26391970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 416
Target Start/End: Complemental strand, 16290916 - 16290865
Alignment:
Q  365 aacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgct 416  Q
    |||| |||||||||||||| |||| ||||||| ||||||||| |||||||||    
T  16290916 aacaccgacatcccaactaggttggcaccccgggaaacctccatcctatgct 16290865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Complemental strand, 26657735 - 26657677
Alignment:
Q  357 caagagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    |||||| ||||| ||||||||||||||||||| |||  || ||||||||| ||||||||    
T  26657735 caagaggaaacaccgacatcccaactaagttggcacttcgggaaacctccatcctatgc 26657677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 47691926 - 47691816
Alignment:
Q  33 actaatatcggttgttgtcattaccattaccacgccttctataaacactttctctccgaagaatacattgggttggacccagttattatccctcatcatt 132  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  47691926 actaatatcggtcgttgtcattaccattaccaccccttctataaacactttctctccgaagaatacattgggttggacccagttgttatctctcatcatt 47691827  T
Q  133 agtgctataaa 143  Q
    ||| |||||||    
T  47691826 agttctataaa 47691816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 34528929 - 34528987
Alignment:
Q  357 caagagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    |||||| ||||| |||||||||||||| |||| ||||||| ||||||||| ||||||||    
T  34528929 caagaggaaacagcgacatcccaactaggttggcaccccgggaaacctccatcctatgc 34528987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 12629262 - 12629317
Alignment:
Q  360 gagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    ||||||||| ||||||||||||||  ||| || |||| ||||||||||||||||||    
T  12629262 gagaaaacaccgacatcccaactagattggcatcccgggaaacctccgtcctatgc 12629317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 3833449 - 3833494
Alignment:
Q  370 cgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    |||||||||||||| |||| ||||||| ||| ||||||||||||||    
T  3833449 cgacatcccaactaggttggcaccccgggaagcctccgtcctatgc 3833494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 18332712 - 18332769
Alignment:
Q  358 aagagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    ||||||||||| |||||||||||||| |||| |||||||   ||||||| ||||||||    
T  18332712 aagagaaaacatcgacatcccaactaggttggcaccccggagaacctccatcctatgc 18332769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 28016057 - 28016008
Alignment:
Q  364 aaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctat 413  Q
    ||||| ||||||||||||||||||| ||||||  |||| |||||||||||    
T  28016057 aaacaccgacatcccaactaagttgacaccccaggaaatctccgtcctat 28016008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 34879930 - 34879983
Alignment:
Q  361 agaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatg 414  Q
    |||||||| |||||||| ||||| |||| |||||||  ||||||||||||||||    
T  34879930 agaaaacaccgacatcctaactaggttggcaccccgaaaaacctccgtcctatg 34879983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 19054395 - 19054451
Alignment:
Q  357 caagagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctat 413  Q
    |||||| ||||| |||||||||||||| |||| ||||||| | ||||||| ||||||    
T  19054395 caagaggaaacaccgacatcccaactaggttggcaccccggggaacctccatcctat 19054451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 404
Target Start/End: Complemental strand, 4936125 - 4936046
Alignment:
Q  325 tttttaggtaagccaggagtcaggacagtcaacaagagaaaacaacgacatcccaactaagttgtcaccccgcgaaacct 404  Q
    ||||||||||| | |||||||| ||||| || |||||| ||||| ||||||||||||||||||| |||||||||||||||    
T  4936125 tttttaggtaatctaggagtcatgacagacatcaagaggaaacatcgacatcccaactaagttggcaccccgcgaaacct 4936046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 415
Target Start/End: Complemental strand, 15159504 - 15159414
Alignment:
Q  325 tttttaggtaagccaggagtcaggacagtcaacaagagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    |||| ||||| ||||||||||||||||   | ||| || ||||||||||||||||||||||||| ||| |||||||||||||  |||||||    
T  15159504 ttttaaggtatgccaggagtcaggacaaatatcaaaaggaaacaacgacatcccaactaagttgacactccgcgaaacctccaacctatgc 15159414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 33040584 - 33040642
Alignment:
Q  357 caagagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    ||||||| |||| |||||||||||||| |||| ||||||| ||||||||| || |||||    
T  33040584 caagagacaacatcgacatcccaactaggttggcaccccgagaaacctccatcatatgc 33040642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 3057015 - 3056947
Alignment:
Q  347 ggacagtcaacaagagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    |||||| || ||||||| |||| |||||||||||||||||||  |||||| ||||||||| ||||||||    
T  3057015 ggacaggcatcaagagacaacatcgacatcccaactaagttggtaccccgagaaacctccatcctatgc 3056947  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 416
Target Start/End: Complemental strand, 9344570 - 9344487
Alignment:
Q  333 taagccaggagtcaggacagtcaacaagagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgct 416  Q
    |||||||||||  | ||||  || ||||||||||||||||||||||||||| |||| ||| |||| ||||||||  ||||||||    
T  9344570 taagccaggagaaatgacatacatcaagagaaaacaacgacatcccaactaggttggcactccgcaaaacctccaccctatgct 9344487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 1110524 - 1110470
Alignment:
Q  357 caagagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcct 411  Q
    |||||| ||||||||||||||||  ||||||| ||| ||||||||||||| ||||    
T  1110524 caagaggaaacaacgacatcccatttaagttggcactccgcgaaacctccatcct 1110470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 9351142 - 9351192
Alignment:
Q  365 aacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    |||| |||||||||||||| |||| ||||||| ||||||||| ||||||||    
T  9351142 aacatcgacatcccaactaggttggcaccccgagaaacctccatcctatgc 9351192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 841317 - 841353
Alignment:
Q  360 gagaaaacaacgacatcccaactaagttgtcaccccg 396  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  841317 gagaaaacaccgacatcccaactaagttggcaccccg 841353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 15050014 - 15050082
Alignment:
Q  325 tttttaggtaagccaggagtcaggacagtcaacaagagaaaacaacgacatcccaactaagttgtcacc 393  Q
    |||||||||||||||||| |  |||||  || |||||| ||||||||| |||||||||| |||| ||||    
T  15050014 tttttaggtaagccaggaatgtggacatgcatcaagaggaaacaacgatatcccaactaggttggcacc 15050082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 35333071 - 35333127
Alignment:
Q  199 cacacagtgcatgtatactttatattatttgtaaaaccaaacatattaatacgacta 255  Q
    |||||| | ||| ||||||||||||||||||||||| ||||| ||||||||| ||||    
T  35333071 cacacactacatatatactttatattatttgtaaaatcaaacttattaatacaacta 35333127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 2259407 - 2259465
Alignment:
Q  357 caagagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    |||||| ||||| |||||||||||||| |||| || |||| ||||||||| ||||||||    
T  2259407 caagaggaaacaccgacatcccaactaggttggcatcccgggaaacctccatcctatgc 2259465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 416
Target Start/End: Original strand, 1512 - 1563
Alignment:
Q  365 aacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgct 416  Q
    |||| |||||||||||||| |||| ||||||| ||||||||| |||||||||    
T  1512 aacaccgacatcccaactaggttggcaccccgggaaacctccatcctatgct 1563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 19973155 - 19973202
Alignment:
Q  114 gttattatccctcatcattagtgctataaaaactttatcttcaaacca 161  Q
    |||||||||||||||||||||| ||||||| ||||| ||||| |||||    
T  19973155 gttattatccctcatcattagttctataaacactttctcttccaacca 19973202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 19826430 - 19826480
Alignment:
Q  365 aacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    |||| |||||||||||||| |||| ||||||  ||||||||||||||||||    
T  19826430 aacatcgacatcccaactaggttggcaccccaagaaacctccgtcctatgc 19826480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 28948936 - 28948885
Alignment:
Q  360 gagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcct 411  Q
    |||| |||| |||||||||||||| |||| ||||||| ||||||||||||||    
T  28948936 gagacaacaccgacatcccaactatgttggcaccccgggaaacctccgtcct 28948885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 415
Target Start/End: Original strand, 40926478 - 40926529
Alignment:
Q  364 aaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    ||||| |||||||||||||| |||| ||||||| ||||||||| ||||||||    
T  40926478 aaacatcgacatcccaactaggttggcaccccgggaaacctccatcctatgc 40926529  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 18270319 - 18270365
Alignment:
Q  370 cgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgct 416  Q
    ||||||||||||||||||| ||||||| || |||||| |||||||||    
T  18270319 cgacatcccaactaagttggcaccccgagagacctccatcctatgct 18270365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 1537958 - 1538026
Alignment:
Q  347 ggacagtcaacaagagaaaacaacgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    |||||| || |||||| ||||| |||||||||||||| |||| ||||  | ||||||||| ||||||||    
T  1537958 ggacagacatcaagaggaaacaccgacatcccaactaggttgccacctagggaaacctccatcctatgc 1538026  T

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Target: scaffold0356 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 13780 - 13735
Alignment:
Q  370 cgacatcccaactaagttgtcaccccgcgaaacctccgtcctatgc 415  Q
    |||||||||||||| |||| ||||||| ||||| ||||||||||||    
T  13780 cgacatcccaactaggttggcaccccgggaaacttccgtcctatgc 13735  T

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