View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19860_high_26 (Length: 383)

Name: NF19860_high_26
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19860_high_26
NF19860_high_26
[»] chr4 (4 HSPs)
chr4 (14-364)||(98099-98447)
chr4 (306-364)||(50638791-50638849)
chr4 (313-363)||(50637974-50638024)
chr4 (104-140)||(24975388-24975424)
[»] chr6 (2 HSPs)
chr6 (14-363)||(24948406-24948765)
chr6 (304-364)||(24949185-24949245)
[»] chr3 (2 HSPs)
chr3 (14-363)||(40828789-40829144)
chr3 (304-364)||(40829563-40829623)
[»] chr1 (2 HSPs)
chr1 (14-363)||(11744551-11744908)
chr1 (304-364)||(11744072-11744132)
[»] chr7 (2 HSPs)
chr7 (306-364)||(16798225-16798283)
chr7 (313-363)||(16797408-16797458)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 98099 - 98447
Alignment:
Q  14 caaaggtacaacaagaaattcatatattatattggttaaatggagtagcgtgtcgtgattggtgaaggtgaatatttgatagaagaagtagccatgagtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  98099 caaaggtacaacaagaaattcatatattatattggttaaatggagtagcgtgtcgtgattggtgaaggtgaatatttgatagaagaagtagccatgagtt 98198  T
Q  114 tggcaattaacacggagagagtggaaggaagaaaatgcttctgggcaatgaagattgagaacgagatgaagaaaatggttatgttctacacttagaattt 213  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  98199 tggcaattaacacagagagagtggaaggaagaaaatgcttctgggcaatgaagattgagaacgagatgaagaaaatggttatgttctacacttagaattt 98298  T
Q  214 atggcttacatcaaagggcgtaaaagtaattattcaacttacnnnnnnnnnnngttatgtgggacaaaatacaannnnnnnngcaatctactattgaagg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||        ||||| ||||||||||||    
T  98299 atggcttacatcaaagggcgtaaaagtaattattcaacttac--tttttttttgttatgtgggacaaaatacaattttttttgcaatatactattgaagg 98396  T
Q  314 tcattttaaggggactatgagtgcacccttgaaaatagggaccatattagg 364  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  98397 tcattttaaggggactacgagtgcacccttaaaaatagggaccatattagg 98447  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 50638791 - 50638849
Alignment:
Q  306 attgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattagg 364  Q
    ||||||||||||||| | ||||| ||| |||||||||| ||||||||||||||||||||    
T  50638791 attgaaggtcattttgaagggaccatgggtgcacccttaaaaatagggaccatattagg 50638849  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 50638024 - 50637974
Alignment:
Q  313 gtcattttaaggggactatgagtgcacccttgaaaatagggaccatattag 363  Q
    |||||||||| ||||| |||||||||||||| |||||||||||||| ||||    
T  50638024 gtcattttaaagggaccatgagtgcacccttaaaaatagggaccatgttag 50637974  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 24975388 - 24975424
Alignment:
Q  104 gccatgagtttggcaattaacacggagagagtggaag 140  Q
    ||||||||||||||||||||||  |||||||||||||    
T  24975388 gccatgagtttggcaattaacatagagagagtggaag 24975424  T

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Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 363
Target Start/End: Complemental strand, 24948765 - 24948406
Alignment:
Q  14 caaaggtacaacaagaaattcatatattatattggtta-------aatggagtagcgtgtcgtgattggtgaaggtgaatatttgatagaagaagtagcc 106  Q
    |||||||||||||||||||||||||||||||| |||||       ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  24948765 caaaggtacaacaagaaattcatatattatatgggttatgggttaaatggagtagcgtgtggtgattggtgaaggtgagtatttgatagaagaagtagcc 24948666  T
Q  107 atgagtttggcaattaacacggagagagtggaaggaagaaaatgcttctgggcaatgaagattgagaacgagatgaagaaaatggttatgttctacactt 206  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||    
T  24948665 atgagtttggcaattaacacagagagagtggaaggaagaaaatgcttctaggcaatgaagattgagaacgagaggaagaaaatggttcttttctacactt 24948566  T
Q  207 agaa-tttatggcttacatcaaagggcgtaaaagtaattattcaacttac-nnnnnnnnnnngttatgtgggacaaaatacaa-nnnnnnnngcaatcta 303  Q
     ||| |||| |||||||||||||||||||||||||||||| |||||||||            |||||||||||||||||||||         ||||||||    
T  24948565 ggaattttaaggcttacatcaaagggcgtaaaagtaattactcaacttacttttttttttttgttatgtgggacaaaatacaatttttttttgcaatcta 24948466  T
Q  304 ctattgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattag 363  Q
    ||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  24948465 ctattgaaggtcattttaaggggaccatgaatgcacccttaaaaatagggaccatattag 24948406  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 24949185 - 24949245
Alignment:
Q  304 ctattgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattagg 364  Q
    ||||||||||| ||||||| ||||| ||| |||||||||| ||||||||||||||||||||    
T  24949185 ctattgaaggttattttaaagggaccatgggtgcacccttaaaaatagggaccatattagg 24949245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 363
Target Start/End: Complemental strand, 40829144 - 40828789
Alignment:
Q  14 caaaggtacaacaagaaattcatatattatattggtta-------aatggagtagcgtgtcgtgattggtgaaggtgaatatttgatagaagaagtagcc 106  Q
    |||||||||||||||||||||||||||||||| |||||       ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  40829144 caaaggtacaacaagaaattcatatattatatgggttatgggttaaatggagtagcgtgtggtgattggtgaaggtgagtatttgatagaagaagtagcc 40829045  T
Q  107 atgagtttggcaattaacacggagagagtggaaggaagaaaatgcttctgggcaatgaagattgagaacgagatgaagaaaatggttatgttctacactt 206  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  40829044 atgagtttggcaattaacacagagagagtggaaggaagaaaatgcttctaggcaatgaagattgagaacgagaggaagaaaatggttttgttctacactt 40828945  T
Q  207 -agaatttatggcttacatcaaagggcgtaaaagtaattattcaacttacnnnnnnnnnnngttatgtgggacaaaatacaannnnnnnngcaatctact 305  Q
     | | |||| |||||||||||||||||||||||||||||| |||||||||           |||||||||||||||||||||         |||||||||    
T  40828944 gaaattttaaggcttacatcaaagggcgtaaaagtaattactcaacttac-ttttttttttgttatgtgggacaaaatacaatttttttttcaatctact 40828846  T
Q  306 attgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattag 363  Q
    |||||||||||||||||||||||  ||| ||||||||| |||||||||||||||||||    
T  40828845 attgaaggtcattttaaggggac-ctgaatgcacccttaaaaatagggaccatattag 40828789  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 40829563 - 40829623
Alignment:
Q  304 ctattgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattagg 364  Q
    ||||||||||| ||||||| ||||| ||| |||||||||| ||||||||||||||||||||    
T  40829563 ctattgaaggttattttaaagggaccatgggtgcacccttaaaaatagggaccatattagg 40829623  T

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Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 11744551 - 11744908
Alignment:
Q  14 caaaggtacaacaagaaattcatatattatattggtt-------aaatggagtagcgtgtcgtgattggtgaaggtgaatatttgatagaagaagtagcc 106  Q
    |||||||||||||||||||||||||||||||| ||||       |||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||    
T  11744551 caaaggtacaacaagaaattcatatattatatgggttatgggttaaatggagtagcgtgtggtgattggtgaaggtgagtatttgatagaagaagtaacc 11744650  T
Q  107 atgagtttggcaattaacacggagagagtggaaggaagaaaatgcttctgggcaatgaagattgagaacgagatgaagaaaatggttatgttctacactt 206  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||| ||||||||||||    
T  11744651 atgagtttggcaattaacacagagagagtggaaggaagaaaatgcttctaggcaatgaagattgaaagcgagaggaagaaaatggttctgttctacactt 11744750  T
Q  207 agaa-tttatggcttacatcaaagggcgtaaaagtaattattcaacttacnnnnnnnnnnngttatgtgggacaaaatacaa-nnnnnnnngcaatctac 304  Q
     ||| |||| |||||||||||||||||||||||||||||| |||||||||           |||||||||||||||||||||         |||||||||    
T  11744751 ggaattttaaggcttacatcaaagggcgtaaaagtaattactcaacttac-ttttttttttgttatgtgggacaaaatacaatttttttttgcaatctac 11744849  T
Q  305 tattgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattag 363  Q
    | |||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||    
T  11744850 tgttgaaggtcattttaaggggaccatgaatacacccttaaaaatagggaccatattag 11744908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 11744132 - 11744072
Alignment:
Q  304 ctattgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattagg 364  Q
    ||||||||||| ||||||| ||||| ||| |||||||||| ||||||||||||||||||||    
T  11744132 ctattgaaggttattttaaagggaccatgggtgcacccttaaaaatagggaccatattagg 11744072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 16798225 - 16798283
Alignment:
Q  306 attgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattagg 364  Q
    ||||||||||||||| | ||||| ||| |||||||||| ||||||||||||||||||||    
T  16798225 attgaaggtcattttgaagggaccatgggtgcacccttaaaaatagggaccatattagg 16798283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 16797458 - 16797408
Alignment:
Q  313 gtcattttaaggggactatgagtgcacccttgaaaatagggaccatattag 363  Q
    |||||||||| ||||| |||||||||||||| |||||||||||||| ||||    
T  16797458 gtcattttaaagggaccatgagtgcacccttaaaaatagggaccatgttag 16797408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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