View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19860_high_31 (Length: 370)
Name: NF19860_high_31
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_high_31 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 30738438 - 30738782
Alignment:
| Q |
14 |
agatccttgagttcagtcaagttaattgatgcatatccatattgcatcgctagaaagccttcaaaattcatagtatttgatttttccaaaataaataaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30738438 |
agatccttgagttcagtcaagttaattgatgcatatccatattgcatcgctagaaagccttcaaaattcatagtatttgatttttccaaaataaataaaa |
30738537 |
T |
|
| Q |
114 |
tcaattagtagaatcaattaacaccattaaaatcaatatatgaagaacnnnnnnn----caatttgttgtnnnnnnngcaactgaataaaattcatttat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||| |||||||||||||||| |||||| |
|
|
| T |
30738538 |
tcaattagtagaatcaattaacaccattacaatcaatatatgaaaaaaaaaaaaaaaaacaaattgttgtaaaaaaagcaactgaataaaattgatttat |
30738637 |
T |
|
| Q |
210 |
gaaaggtgaaataatttattgaaacataataaatcaattaaaaatagcatagtgcaaccatcatataatgtgcaaagttagtatgcaaaatatacctcta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30738638 |
gaaaggtgaaataatttattgaaacataataaatcaattaaaaatagcatggtgcaaccatcatataatgtgcaaagttagtatgcaaaatatacctcta |
30738737 |
T |
|
| Q |
310 |
ctatccaaagaggtagcagtcatattcactgcagaaccaaatgtc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30738738 |
ctatccaaagaggtagcagtcatattcactgcagaaccaaatgtc |
30738782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University