View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19860_high_37 (Length: 331)

Name: NF19860_high_37
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19860_high_37
NF19860_high_37
[»] chr4 (14 HSPs)
chr4 (16-168)||(21014702-21014854)
chr4 (180-275)||(43145985-43146080)
chr4 (69-162)||(25361717-25361810)
chr4 (69-163)||(24914469-24914563)
chr4 (182-275)||(17447714-17447807)
chr4 (180-279)||(4379985-4380084)
chr4 (105-167)||(17622032-17622094)
chr4 (74-167)||(34347426-34347518)
chr4 (55-168)||(35850175-35850287)
chr4 (179-249)||(4380644-4380714)
chr4 (164-248)||(53772821-53772905)
chr4 (181-250)||(31328833-31328902)
chr4 (103-148)||(47643274-47643319)
chr4 (184-264)||(24157934-24158014)
[»] chr2 (5 HSPs)
chr2 (25-163)||(7718711-7718848)
chr2 (105-164)||(10003581-10003640)
chr2 (180-277)||(9540959-9541056)
chr2 (55-130)||(7713710-7713783)
chr2 (105-163)||(9044086-9044144)
[»] chr1 (3 HSPs)
chr1 (71-166)||(36353031-36353126)
chr1 (68-164)||(39305462-39305558)
chr1 (168-279)||(40022167-40022278)
[»] chr6 (1 HSPs)
chr6 (75-167)||(8486755-8486847)
[»] chr5 (1 HSPs)
chr5 (180-250)||(29088570-29088640)
[»] chr3 (6 HSPs)
chr3 (55-161)||(29636347-29636452)
chr3 (164-264)||(48648217-48648317)
chr3 (105-161)||(33456728-33456784)
chr3 (164-250)||(30222051-30222137)
chr3 (166-206)||(13349431-13349471)
chr3 (164-224)||(48649152-48649212)
[»] chr8 (5 HSPs)
chr8 (90-167)||(40481365-40481442)
chr8 (89-145)||(11623699-11623755)
chr8 (105-161)||(11872233-11872289)
chr8 (164-207)||(3043960-3044003)
chr8 (55-167)||(36036582-36036691)
[»] scaffold0027 (1 HSPs)
scaffold0027 (68-167)||(25845-25944)
[»] chr7 (1 HSPs)
chr7 (104-163)||(44680118-44680177)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 21014854 - 21014702
Alignment:
Q  16 aaaaacttttttctacatatgccacaatcacatccattcttaaaagaattctgataagcaattgaaacattcagataacaaattgcagctttgacaaact 115  Q
    |||||||| ||||||||||| | ||||||| | ||||| |||| ||| ||   |||||||| | |||| |||||||||||||||||||||||||||||||    
T  21014854 aaaaacttctttctacatatccaacaatcatagccattgttaagagagtttcaataagcaactaaaacgttcagataacaaattgcagctttgacaaact 21014755  T
Q  116 caagaatttcaaatgctaacatcaacatatttggcaaagatatttgcaacacc 168  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  21014754 caagaatttcaaatgctgacatcaacatatttgacaaagacatttgcaacacc 21014702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 275
Target Start/End: Original strand, 43145985 - 43146080
Alignment:
Q  180 aattcgttaacaccaaatgttaaccgttaatctcttttaatccaagagcttatgtttgttcatttaaaataactcgtgaaccactcacacacgatt 275  Q
    |||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||   ||||||| |||| |||| ||||    
T  43145985 aattcgttgacaccaaatgttaaccgttgatctcttttgatctaagagcttatgtttgttcatttaaaatactacgtgaactactctcacaggatt 43146080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 25361717 - 25361810
Alignment:
Q  69 ataagcaattgaaacattcagataacaaattgcagctttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttgc 162  Q
    |||||||||||||||||||  ||||||| |||  ||||||| |||||||||||||||||||||| ||||  |||||||||||||||| ||||||    
T  25361717 ataagcaattgaaacattcgaataacaatttgtggctttgataaactcaagaatttcaaatgctgacattgacatatttggcaaagacatttgc 25361810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 24914563 - 24914469
Alignment:
Q  69 ataagcaattgaaacattcagataacaaattgcagctttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttgca 163  Q
    |||||||||||||||||||  ||||||| |||  ||||||| |||||||||||||||||||| | ||||  ||||||||||| |||| |||||||    
T  24914563 ataagcaattgaaacattcgaataacaatttgtggctttgataaactcaagaatttcaaatgttgacattgacatatttggcgaagacatttgca 24914469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 17447714 - 17447807
Alignment:
Q  182 ttcgttaacaccaaatgttaaccgttaatctcttttaatccaagagcttatgtttgttcatttaaaataactcgtgaaccactcacacacgatt 275  Q
    |||||| ||||||||| ||||||||| ||||||||||||| ||| | |||| ||||||||||||||||| | ||||||| |||| |||| ||||    
T  17447714 ttcgttgacaccaaatattaaccgttgatctcttttaatctaagggtttatatttgttcatttaaaataccacgtgaactactctcacaggatt 17447807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 4379985 - 4380084
Alignment:
Q  180 aattcgttaacaccaaatgttaaccgttaatctcttttaatccaagagcttatgtttgttcatttaaaataactcgtgaaccactcacacacgattgtgg 279  Q
    ||||| || ||||||||||||||||||| ||||||||| ||| ||| |||| | |||||| |||||||||| |  ||||||||| | |||||||||||||    
T  4379985 aattcattgacaccaaatgttaaccgttgatctcttttgatctaagggcttgtatttgtttatttaaaataccatgtgaaccaccctcacacgattgtgg 4380084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 17622032 - 17622094
Alignment:
Q  105 tttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttgcaacac 167  Q
    ||||||||||||| |||||||||||||||||||||||| ||||  |||||||||||| |||||    
T  17622032 tttgacaaactcatgaatttcaaatgctaacatcaacacatttaacaaagatatttgtaacac 17622094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 34347426 - 34347518
Alignment:
Q  74 caattgaaacattcagataacaaattgcagctttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttgcaacac 167  Q
    |||||||||||||  ||||||| || |||||||| |||||||||| ||||||||||| |  ||||||| ||||||||| |||||||| ||||||    
T  34347426 caattgaaacatttggataacacat-gcagctttaacaaactcaaaaatttcaaatgatgtcatcaacttatttggcatagatatttacaacac 34347518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 55 - 168
Target Start/End: Original strand, 35850175 - 35850287
Alignment:
Q  55 ttaaaagaattctgataagcaattgaaacattcagataacaaattgcagctttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaag 154  Q
    |||| ||||||| ||||||||||||||||||||||||||     | |   ||||| ||| |||||||||||||||||| | ||||||| |||||||||||    
T  35850175 ttaatagaattc-gataagcaattgaaacattcagataattgtctacgattttgataaattcaagaatttcaaatgctgaaatcaacacatttggcaaag 35850273  T
Q  155 atatttgcaacacc 168  Q
    | ||||||||||||    
T  35850274 aaatttgcaacacc 35850287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 4380714 - 4380644
Alignment:
Q  179 aaattcgttaacaccaaatgttaaccgttaatctcttttaatccaagagcttatgtttgttcatttaaaat 249  Q
    ||||||||| ||||||||| ||||||||| ||||||||| ||| ||| |||| | ||||||||||||||||    
T  4380714 aaattcgttgacaccaaatattaaccgttgatctcttttgatctaagggcttgtatttgttcatttaaaat 4380644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 53772821 - 53772905
Alignment:
Q  164 acaccaggtgttaacaaattcgttaacaccaaatgttaaccgttaatctcttttaatccaagagcttatgtttgttcatttaaaa 248  Q
    ||||||||||| |||  ||||||| ||||||||| |||| |||| || |||||| ||||||  |||| |||||||||||||||||    
T  53772821 acaccaggtgtcaacggattcgttgacaccaaatattaatcgttgatttcttttgatccaaaggcttttgtttgttcatttaaaa 53772905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 31328833 - 31328902
Alignment:
Q  181 attcgttaacaccaaatgttaaccgttaatctcttttaatccaagagcttatgtttgttcatttaaaata 250  Q
    ||||||| ||||||||| |||| |||| || ||||||||||  |  |||||| |||||||||||||||||    
T  31328833 attcgttgacaccaaattttaaacgttgatttcttttaatctgaaggcttatatttgttcatttaaaata 31328902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 47643319 - 47643274
Alignment:
Q  103 gctttgacaaactcaagaatttcaaatgctaacatcaacatatttg 148  Q
    ||||||||||| |||||| |||||||||||||| |||||| |||||    
T  47643319 gctttgacaaattcaagattttcaaatgctaacgtcaacacatttg 47643274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 24157934 - 24158014
Alignment:
Q  184 cgttaacaccaaatgttaaccgttaatctcttttaatccaagagcttatgtttgttcatttaaaataactcgtgaaccact 264  Q
    |||| ||||||||| ||||||||| || |||||| ||| ||  |||||| |||||||||||| |||| |  ||||||||||    
T  24157934 cgttgacaccaaatcttaaccgttgatttctttttatctaaaggcttatatttgttcatttagaatatcatgtgaaccact 24158014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 7718848 - 7718711
Alignment:
Q  25 tttctacatatgccacaatcacatccattcttaaaagaattctgataagcaattgaaacattcagataacaaattgcagctttgacaaactcaagaattt 124  Q
    ||||| || |||| ||| ||||||  ||| |||||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  7718848 tttctgcagatgcaacactcacatatattgttaaaagaattc-gatatgcaattgaaacattcatataacaatttgcagctttgacaaactcaagaattt 7718750  T
Q  125 caaatgctaacatcaacatatttggcaaagatatttgca 163  Q
    |||||| | ||||| ||| ||||| | |||| |||||||    
T  7718749 caaatgttcacatctacacatttgacgaagacatttgca 7718711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 10003640 - 10003581
Alignment:
Q  105 tttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttgcaa 164  Q
    |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  10003640 tttgacaaactcaagaatttcaaatgttgacatcaacacatttggcaaagatatttgcaa 10003581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 9541056 - 9540959
Alignment:
Q  180 aattcgttaacaccaaatgttaaccgttaatctcttttaatccaagagcttatgtttgttcatttaaaataactcgtgaaccactcacacacgattgt 277  Q
    |||||||| ||||||||| ||| ||||| || |||||| |||| |  |||||| |||||||||||| |||| |  |||||||||||||||||||||||    
T  9541056 aattcgttgacaccaaatcttagccgttgatatcttttgatccgatggcttatatttgttcatttagaatatcatgtgaaccactcacacacgattgt 9540959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 7713783 - 7713710
Alignment:
Q  55 ttaaaagaattctgataagcaattgaaacattcagataacaaattgcagctttgacaaactcaagaatttcaaatg 130  Q
    |||||||||||| ||||  ||||||||||| ||||||||||| |||| |||||| ||||| |||||||| ||||||    
T  7713783 ttaaaagaattc-gatacacaattgaaacactcagataacaatttgcggctttg-caaacccaagaattgcaaatg 7713710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 9044144 - 9044086
Alignment:
Q  105 tttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttgca 163  Q
    |||||||||||||||||||||| ||||  ||||||||| |||||  ||||| |||||||    
T  9044144 tttgacaaactcaagaatttcatatgccgacatcaacacatttgataaagagatttgca 9044086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 36353126 - 36353031
Alignment:
Q  71 aagcaattgaaacattcagataacaaattgcagctttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttgcaaca 166  Q
    |||||||||||||||| | ||| ||| |||| | |||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||    
T  36353126 aagcaattgaaacatttaaatatcaatttgcggttttgacaaactcaagaatttcaaatgctaacatcaacatacttggcaaaagtatttgcaaca 36353031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 39305462 - 39305558
Alignment:
Q  68 gataagcaattgaaacattcagataacaaattgcagctttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttgcaa 164  Q
    |||||||||||||||||||  ||||||||  ||| ||||||| |||| ||||||||||||| |||| | |||||| |||||||||||||||||||||    
T  39305462 gataagcaattgaaacatttggataacaatatgcggctttgataaacacaagaatttcaaaagctagcgtcaacacatttggcaaagatatttgcaa 39305558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 168 - 279
Target Start/End: Original strand, 40022167 - 40022278
Alignment:
Q  168 caggtgttaacaaattcgttaacaccaaatgttaaccgttaatctcttttaatccaagagcttatgtttgttcatttaaaataactcgtgaaccactcac 267  Q
    ||||||| ||| |||||||| ||||| ||||||| ||||| ||||||||| ||| |||||||| | ||||||||||||||||| | |||||||||| |      
T  40022167 caggtgtcaacgaattcgttgacacctaatgttacccgttgatctcttttgatctaagagcttgtatttgttcatttaaaataccacgtgaaccaccctg 40022266  T
Q  268 acacgattgtgg 279  Q
    ||||||||||||    
T  40022267 acacgattgtgg 40022278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 8486847 - 8486755
Alignment:
Q  75 aattgaaacattcagataacaaattgcagctttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttgcaacac 167  Q
    ||||||||||||   |||||||  ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||    
T  8486847 aattgaaacattttaataacaatctgcagctttgacaaactcaaggattccaaatgctaacatcaacatatttgacaaagatttttgcaacac 8486755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 29088640 - 29088570
Alignment:
Q  180 aattcgttaacaccaaatgttaaccgttaatctcttttaatccaagagcttatgtttgttcatttaaaata 250  Q
    |||||||| ||||  ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  29088640 aattcgttgacacttaatgttaaccgttgatctcttttgatctaagagcttatgtttgttcatttaaaata 29088570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 29636347 - 29636452
Alignment:
Q  55 ttaaaagaattctgataagcaattgaaacattcagataacaaattgcagctttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaag 154  Q
    |||| ||||||| ||||| |||||||||||||| |||||||| | || ||||||||||| ||   ||||||||||| | ||||  |||||||||||||||    
T  29636347 ttaagagaattc-gataaacaattgaaacattcggataacaattcgcggctttgacaaaatccttaatttcaaatgttgacattgacatatttggcaaag 29636445  T
Q  155 atatttg 161  Q
    |||||||    
T  29636446 atatttg 29636452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 264
Target Start/End: Original strand, 48648217 - 48648317
Alignment:
Q  164 acaccaggtgttaacaaattcgttaacaccaaatgttaaccgttaatctcttttaatccaagagcttatgtttgttcatttaaaataactcgtgaaccac 263  Q
    ||||||||||| |||  ||||||| ||||||||| ||||||||| || |||||| ||| ||  |||||| |||||||||||| |||| |  |||||||||    
T  48648217 acaccaggtgtcaacggattcgttgacaccaaatcttaaccgttgatttctttttatctaaaggcttatatttgttcatttagaatatcatgtgaaccac 48648316  T
Q  264 t 264  Q
    |    
T  48648317 t 48648317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 33456784 - 33456728
Alignment:
Q  105 tttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttg 161  Q
    ||||||||||||||  |||||||||||  ||||||||| ||||| ||||||||||||    
T  33456784 tttgacaaactcaaatatttcaaatgccgacatcaacacatttgacaaagatatttg 33456728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 30222137 - 30222051
Alignment:
Q  164 acaccaggtgttaacaaattcgttaacaccaaatgttaaccgttaatctcttttaatccaagagcttatgtttgttcatttaaaata 250  Q
    ||||||||||| || | ||||||| | ||||||| |||| |||| || ||||||||||  |  |||||| |||||||||||||||||    
T  30222137 acaccaggtgtcaatagattcgttgataccaaattttaagcgttgatttcttttaatctgaaggcttatatttgttcatttaaaata 30222051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 13349431 - 13349471
Alignment:
Q  166 accaggtgttaacaaattcgttaacaccaaatgttaaccgt 206  Q
    ||||||||| |||||||||||| ||||||||| ||||||||    
T  13349431 accaggtgtcaacaaattcgttgacaccaaatcttaaccgt 13349471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 48649212 - 48649152
Alignment:
Q  164 acaccaggtgttaacaaattcgttaacaccaaatgttaaccgttaatctcttttaatccaa 224  Q
    ||||||||||| |||| ||||||| ||||||||| ||||||||| || || ||| ||||||    
T  48649212 acaccaggtgtcaacagattcgttgacaccaaatcttaaccgttgatttcatttgatccaa 48649152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 40481365 - 40481442
Alignment:
Q  90 ataacaaattgcagctttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttgcaacac 167  Q
    ||||||| |||  |||||||||||||||||||||| |||| |  |||||| ||||||||||||||| |||||||||||    
T  40481365 ataacaatttgaggctttgacaaactcaagaattttaaataccgacatcatcatatttggcaaagacatttgcaacac 40481442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 11623699 - 11623755
Alignment:
Q  89 gataacaaattgcagctttgacaaactcaagaatttcaaatgctaacatcaacatat 145  Q
    ||||||||  |||| |||||||||||| |||||||||||||| | ||||||||||||    
T  11623699 gataacaatatgcacctttgacaaactgaagaatttcaaatgttgacatcaacatat 11623755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 11872233 - 11872289
Alignment:
Q  105 tttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttg 161  Q
    ||||||||||||| |||||||||||| | ||||||||| ||||  ||||||||||||    
T  11872233 tttgacaaactcatgaatttcaaatgttgacatcaacacatttaacaaagatatttg 11872289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 3044003 - 3043960
Alignment:
Q  164 acaccaggtgttaacaaattcgttaacaccaaatgttaaccgtt 207  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||    
T  3044003 acaccaggtgtcaacgaattcgttgacaccaaatgttaaccgtt 3043960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 36036582 - 36036691
Alignment:
Q  55 ttaaaagaattctgataagcaattgaaacattcagataacaaattgcagctttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaag 154  Q
    |||| ||||||| ||||||||||||||| ||||||||||| || |||| |||| ||||| || | ||||||||||| | ||||| | ||||||| ||||     
T  36036582 ttaagagaattc-gataagcaattgaaatattcagataac-aactgcaactttaacaaa-tcgaaaatttcaaatgttgacatcgaaatatttgacaaat 36036678  T
Q  155 atatttgcaacac 167  Q
    | |||| ||||||    
T  36036679 acatttacaacac 36036691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 25845 - 25944
Alignment:
Q  68 gataagcaattgaaacattcagataacaaattgcagctttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttgcaacac 167  Q
    ||||||||| |||||||||||||||||||  ||| ||| ||| || ||||||||||||||||||    ||  ||| |||||||| |||||||||||||||    
T  25845 gataagcaactgaaacattcagataacaatgtgcggctatgagaagctcaagaatttcaaatgcaggtattgacaaatttggcatagatatttgcaacac 25944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 44680177 - 44680118
Alignment:
Q  104 ctttgacaaactcaagaatttcaaatgctaacatcaacatatttggcaaagatatttgca 163  Q
    ||||||||||||||||||| ||||||  | ||| ||||| ||||| ||||||||||||||    
T  44680177 ctttgacaaactcaagaatgtcaaattatgacaccaacacatttgacaaagatatttgca 44680118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University