View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_high_44 (Length: 301)
Name: NF19860_high_44
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 34868281 - 34868566
Alignment:
| Q |
1 |
acttggtttacaaatttgacaataagtgattactatctgtccaagttgccaagatcatcaaaatcataaagaaacccaaatgcatcggtgtcttacatgt |
100 |
Q |
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| T |
34868281 |
acttggtttacaaatttgacaataagtgattactatctgtccaagttgccaagatcatcaaaatcataaagaaacccaaatgcatcggtgtcttacatgt |
34868380 |
T |
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| Q |
101 |
tctatttttgatatatgcaattgtttggatttgtttgaaaccattggatgtctggatgctctcataatttcagtttcatagagatgtaatat-agcttgt |
199 |
Q |
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| T |
34868381 |
tctatttttgatatatgcaattgtttggatttgtttgaaaccattggatgtctggatgttctcataatttcagtttcatagagatgtaatataagcttgt |
34868480 |
T |
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| Q |
200 |
caactgctgcaacctctaaaacattaaaggttgaaggatacaacaacaagaaggagatgaagttagaaagccacacaagttaattg |
285 |
Q |
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| T |
34868481 |
caactgctgcaacctctaaaacattaaaggttgaaggatacaacaacaagaaggagatgaagttagaaagccacacaagttaattg |
34868566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 34875538 - 34875804
Alignment:
| Q |
10 |
acaaatttgacaataagtgattactatctgtccaagttgccaagatcatcaaaatcataaagaaacccaaatgcatcggtgtcttacatgttctattttt |
109 |
Q |
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| T |
34875538 |
acaaagttgacaatatgtgattactacttgtccaagttaccatgatcatcaaaatcataaa-agccccaaattcatcagtgtcttactttat---ttttt |
34875633 |
T |
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| Q |
110 |
gatatatgcaattgtttggatttgtttgaaaccattggatgtctggatgctctcataatttcagtttcatagagatgtaatatag-cttgtcaactgctg |
208 |
Q |
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| T |
34875634 |
gatctatgcaattatttggatttgagt-atacctgtggatgcctggttattctcataattccagtttcatagagatgtaacttaggcttgtcaactgctg |
34875732 |
T |
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| Q |
209 |
caacctctaaaacattaaaggttgaaggatacaacaacaagaaggagatgaagttagaaagccacacaagtt |
280 |
Q |
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| T |
34875733 |
caacctctaaaagattaaaggttgcaggatacaggaaaaggaaggagatgaagttagaaatccacacaagtt |
34875804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 34871731 - 34871788
Alignment:
| Q |
9 |
tacaaatttgacaataagtgattactatctgtccaagttgccaagatcatcaaaatca |
66 |
Q |
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| T |
34871731 |
tacaaatttgataatatctgattactatttgtccaagttaccaagatcatcaaaatca |
34871788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 38381598 - 38381488
Alignment:
| Q |
171 |
cagtttcatagagatgtaatatag-cttgtcaactgctgcaacctctaaaacattaaaggttgaaggatacaacaacaagaaggagatgaagttagaaag |
269 |
Q |
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| T |
38381598 |
cagtttcatatagatgtattttaggcttgtcaactgctgcaatttctaaaagattaaaggttgaaggatataggaaaaagaaagagatgaaattggaaag |
38381499 |
T |
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| Q |
270 |
ccacacaagtt |
280 |
Q |
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| T |
38381498 |
ccacagaagtt |
38381488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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