View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19860_high_49 (Length: 279)

Name: NF19860_high_49
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19860_high_49
NF19860_high_49
[»] chr4 (2 HSPs)
chr4 (22-262)||(47213405-47213645)
chr4 (73-150)||(46899887-46899964)
[»] chr7 (5 HSPs)
chr7 (73-135)||(24673342-24673404)
chr7 (97-159)||(34925273-34925335)
chr7 (108-160)||(24375760-24375811)
chr7 (107-155)||(28726959-28727007)
chr7 (73-142)||(18749173-18749242)
[»] chr3 (1 HSPs)
chr3 (73-134)||(36060350-36060411)
[»] chr1 (1 HSPs)
chr1 (79-132)||(23312914-23312967)
[»] scaffold0223 (1 HSPs)
scaffold0223 (76-134)||(10599-10657)
[»] chr8 (2 HSPs)
chr8 (91-128)||(8683660-8683697)
chr8 (78-159)||(18899920-18900003)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 22 - 262
Target Start/End: Original strand, 47213405 - 47213645
Alignment:
Q  22 atattccttagaatttgttcgaataaggaaaacaagatctgtctcttgtatcagtgttgtcaattgcgaatcacagaaaattgaagtttgttcaaattct 121  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47213405 atattccatagaatttgttcgaataaggaaaacaagatctgtctcttgtatcagtgttgtcaattgcgaatcacagaaaattgaagtttgttcaaattct 47213504  T
Q  122 gttatgcaacagtgccatagccgctatttaacaacattgctaactaggcgctatatcgcgttatagctcctacctaacgacattgttgtcaatagtaatg 221  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47213505 gttatgcaacagtgccatagccgctatttaacaacatttctaactaggcgctatatcgcgttatagctcctacctaacgacattgttgtcgatagtaatg 47213604  T
Q  222 taaaaaggaaagtaaaattgatcaactatgagggaacatat 262  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47213605 taaaaaggaaagtaaaattgatcaactatgagggaacatat 47213645  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 46899887 - 46899964
Alignment:
Q  73 cagtgttgtcaattgcgaatcacagaaaattgaagtttgttcaaattctgttatgcaacagtgccatagccgctattt 150  Q
    ||||||||||||||| | ||||||||||||||   ||||||||||||    ||||||||||||  ||||| |||||||    
T  46899887 cagtgttgtcaattgtggatcacagaaaattgtgctttgttcaaatttccctatgcaacagtgttatagctgctattt 46899964  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 24673342 - 24673404
Alignment:
Q  73 cagtgttgtcaattgcgaatcacagaaaattgaagtttgttcaaattctgttatgcaacagtg 135  Q
    ||||||||| ||||||| |||||||||||| |  |||||||||||||| | ||||||||||||    
T  24673342 cagtgttgttaattgcggatcacagaaaatagtggtttgttcaaattcagctatgcaacagtg 24673404  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 34925273 - 34925335
Alignment:
Q  97 gaaaattgaagtttgttcaaattctgttatgcaacagtgccatagccgctatttaacaacatt 159  Q
    |||||| | ||||||||||||||||| ||||| ||| ||| ||||||||||||| ||||||||    
T  34925273 gaaaatagcagtttgttcaaattctgctatgctacaatgctatagccgctatttgacaacatt 34925335  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 24375811 - 24375760
Alignment:
Q  108 tttgttcaaattctgttatgcaacagtgccatagccgctatttaacaacattg 160  Q
    ||||||||||||||| ||||||| ||||| |||||||||| ||||||||||||    
T  24375811 tttgttcaaattctgctatgcaatagtgctatagccgcta-ttaacaacattg 24375760  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 28727007 - 28726959
Alignment:
Q  107 gtttgttcaaattctgttatgcaacagtgccatagccgctatttaacaa 155  Q
    |||||||||||||| | |||||||||||||||||||| |||||| ||||    
T  28727007 gtttgttcaaattccgctatgcaacagtgccatagccactatttcacaa 28726959  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 18749173 - 18749242
Alignment:
Q  73 cagtgttgtcaattgcgaatcacagaaaattgaagtttgttcaaattctgttatgcaacagtgccatagc 142  Q
    ||||||||||||  ||||| |||| ||||| | |||||||||||||| |||||  ||||||||| |||||    
T  18749173 cagtgttgtcaaacgcgaaccacaaaaaatagcagtttgttcaaattatgttacacaacagtgctatagc 18749242  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 36060411 - 36060350
Alignment:
Q  73 cagtgttgtcaattgcgaatcacagaaaattgaagtttgttcaaattctgttatgcaacagt 134  Q
    ||||||||||||||||||||| | |||||| |  ||||||||||||| || |||||||||||    
T  36060411 cagtgttgtcaattgcgaatcccggaaaatagtggtttgttcaaattttgctatgcaacagt 36060350  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 23312914 - 23312967
Alignment:
Q  79 tgtcaattgcgaatcacagaaaattgaagtttgttcaaattctgttatgcaaca 132  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||| | |||||||    
T  23312914 tgtcaattgtgaatcacacaaaatagaagtttgttcaaattctggtgtgcaaca 23312967  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 10599 - 10657
Alignment:
Q  76 tgttgtcaattgcgaatcacagaaaattgaagtttgttcaaattctgttatgcaacagt 134  Q
    |||| ||||||| ||||| |||||||| |  |||||||||||||||| |||||||||||    
T  10599 tgttatcaattgtgaatcgcagaaaatagcggtttgttcaaattctgctatgcaacagt 10657  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 8683697 - 8683660
Alignment:
Q  91 atcacagaaaattgaagtttgttcaaattctgttatgc 128  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  8683697 atcacagaaaattgtagtttgttcaaattctgctatgc 8683660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 18899920 - 18900003
Alignment:
Q  78 ttgtcaattgcgaatcacagaaaattgaagtttgttcaaattctgttatgcaacagtgccata--gccgctatttaacaacatt 159  Q
    ||||||||||| |||| |||||||| | ||||||||||||||| | ||  ||||||||| |||  ||| |||||| ||||||||    
T  18899920 ttgtcaattgcaaatcgcagaaaatagtagtttgttcaaattccgctacacaacagtgctatattgcctctatttgacaacatt 18900003  T

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