View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_high_55 (Length: 258)
Name: NF19860_high_55
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_high_55 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 14577602 - 14577859
Alignment:
| Q |
1 |
tgactagcggaaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtgataagcttcatgaattgtc |
100 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
14577602 |
tgactagcgaaaaactctcttttgcatcccactgcttgtgttttccatcaaataagaatctaatagttggagcacttcgtgataagcttcgtgaattgtc |
14577701 |
T |
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| Q |
101 |
actctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaacctttatatgaatattaag |
200 |
Q |
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| T |
14577702 |
acactcgagaaacggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaacctttatatgaatattaag |
14577801 |
T |
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| Q |
201 |
tgattttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataag |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14577802 |
tgattttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataag |
14577859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 14578004 - 14578249
Alignment:
| Q |
11 |
aaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtgataagcttcatgaattgtcactctcgaga |
110 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |||||||||| ||| |||| |
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| T |
14578004 |
aaaactctcttttgcatcccatcacctgtgttttccaccaaataagaatctaatggttggagcacttcgtaataagcttcgtgaattgtcagtctagaga |
14578103 |
T |
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| Q |
111 |
aatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaacctttatatgaatattaagtgattttagc |
210 |
Q |
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| T |
14578104 |
aatgacaatgctctttct-ctttggctaatgctacttgtagcgaaagtttacatatcgaattaatcacgaaccattatatgaatattaagtgactgtaac |
14578202 |
T |
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| Q |
211 |
gaaagactctcttttgcatcccaccgcttgtgttttccaccaaataag |
258 |
Q |
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| T |
14578203 |
ggaaaactctcttttgcat-ccaccagttgtgttttccaccaaataag |
14578249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 14577407 - 14577657
Alignment:
| Q |
5 |
tagcggaaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtgataagcttcatgaattgtcactc |
104 |
Q |
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|||||||||||||||||||||||||| | |||||||||| ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||| || |
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| T |
14577407 |
tagcggaaaactctcttttgcatcccaccgcttgtgtttat-accaaataagaatttaatggttggagcacttcgtgataagcttcgtgaattgtcaatc |
14577505 |
T |
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| Q |
105 |
tcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaacctttatatgaatattaagtgat |
204 |
Q |
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|| |||||| |||||||| |||| |||||||||||||||| | ||||||| |||||||||| |||||||||| |||| | ||||||||||||||||| |
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| T |
14577506 |
tcaagaaatagcaatgctcttttctctttggctaatgctactaaaagcgaaattttacatagcaaattaatcacgaaccgtgatatgaatattaagtga- |
14577604 |
T |
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| Q |
205 |
tttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataag |
258 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
14577605 |
-ctagcgaaaaactctcttttgcatcccactgcttgtgttttccatcaaataag |
14577657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 14578202 - 14578451
Alignment:
| Q |
8 |
cggaaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtgataagcttcatgaattgtcactctcg |
107 |
Q |
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|||||||||||||||||||||| | | ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |||||||| | |||| |
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| T |
14578202 |
cggaaaactctcttttgcatccaccag-ttgtgttttccaccaaataagaatctaatggttggagcacttcatgataagctttgtgaattgttagcctcg |
14578300 |
T |
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| Q |
108 |
agaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaacctttatatgaatattaagtgatttt |
207 |
Q |
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|||||| |||||||| |||| |||||||||||||||| ||||||| |||||||||||| | |||||||||| ||| ||||||||||||||||||| | |
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| T |
14578301 |
agaaatagcaatgctcttttctctttggctaatgctacttgtagcaaaagtttacataccaaattaatcacgaacggttatatgaatattaagtgaccgt |
14578400 |
T |
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| Q |
208 |
agcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataag |
258 |
Q |
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|||| || |||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
14578401 |
agcggaaaactctcttttgcatcccaccacttatgttttccaccaaataag |
14578451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 14577282 - 14577445
Alignment:
| Q |
82 |
ataagcttcatgaattgtcactctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaa |
181 |
Q |
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||||||||| |||||||||| |||| |||||| |||||||| |||| ||||||| ||||| | ||||||||||||||||||||||||||||||||| || |
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| T |
14577282 |
ataagcttcgtgaattgtcagtctcaagaaatagcaatgctcttttctctttggataatgttgcttgtagcgaaagtttacatagcgaattaatcacgaa |
14577381 |
T |
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| Q |
182 |
cctttatatgaatattaagtgattttagcgaaagactctcttttgcatcccaccgcttgtgttt |
245 |
Q |
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| T |
14577382 |
ccgttatatgaatattaagtgaccgtagcggaaaactctcttttgcatcccaccgcttgtgttt |
14577445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 14577808 - 14578049
Alignment:
| Q |
5 |
tagcggaaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtgataagcttcatgaattgtcactc |
104 |
Q |
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||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||| || |
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| T |
14577808 |
tagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataagaatctaatggttgaagtacttc------------atgaattgtcaatc |
14577895 |
T |
|
| Q |
105 |
tcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaacctttatatgaatattaagtgat |
204 |
Q |
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|| ||||| |||||| |||| ||||||||||||| || |||||||||||||||| ||||||||||||||| |||| |||||||||||||| |||| |
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| T |
14577896 |
tctcgaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatatagcgaattaatcaagaaccattatatgaatattacgtgaa |
14577995 |
T |
|
| Q |
205 |
tttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataag |
258 |
Q |
| |
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| |||| || |||||||||||||||||| | | |||||||||||||||||||| |
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| T |
14577996 |
tgtagcataaaactctcttttgcatcccatcacctgtgttttccaccaaataag |
14578049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 14578400 - 14578517
Alignment:
| Q |
5 |
tagcggaaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtgataagcttcatgaattgtcactc |
104 |
Q |
| |
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|||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||| |||||||| |||||||||| | |||||||| || |
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| T |
14578400 |
tagcggaaaactctcttttgcatcccaccacttatgttttccaccaaataagaatctaatggttgctgcacttcgcgataagcttcgtaaattgtcagtc |
14578499 |
T |
|
| Q |
105 |
tcgagaaatggcaatgct |
122 |
Q |
| |
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||| |||| |||||||| |
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| T |
14578500 |
tcgtaaaatagcaatgct |
14578517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 257
Target Start/End: Original strand, 8907180 - 8907300
Alignment:
| Q |
137 |
taatgctagttgtagcgaaagtttacatagcgaattaatcacaaacctttatatgaatattaagtgattttagcgaaagactctcttttgcatcccaccg |
236 |
Q |
| |
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|||||||| ||||||| |||||||||||| |||||||||| |||| ||||||||||||||| ||| | |||| ||| ||||| ||||||||| || || |
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| T |
8907180 |
taatgctacttgtagcaaaagtttacataacgaattaatcgcaaattgttatatgaatattaaatgactatagcaaaaaactctgttttgcatctcatcg |
8907279 |
T |
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| Q |
237 |
cttgtgttttccaccaaataa |
257 |
Q |
| |
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||||||||||||||||||||| |
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| T |
8907280 |
cttgtgttttccaccaaataa |
8907300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 8907256 - 8907327
Alignment:
| Q |
11 |
aaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtga |
82 |
Q |
| |
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|||||||| ||||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
8907256 |
aaaactctgttttgcatctcatcgcttgtgttttccaccaaataaaaatctaattgtttgagcacttcgtga |
8907327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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