View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_high_60 (Length: 244)
Name: NF19860_high_60
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_high_60 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 40852849 - 40852620
Alignment:
| Q |
1 |
ttttatgatgttcttcctcttcatttcacattcatactcatctccagcttatcccacaaacaatgacattctcctttcttcaactgcatcctacccaaaa |
100 |
Q |
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| T |
40852849 |
ttttatgatgttcttcctcttcatttcacattcatactcatctccagcttatcccacaaacaatgacattctcctttcttcaactgcatcctacccaaaa |
40852750 |
T |
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| Q |
101 |
ttacaagcagaaaatctcataagagggcttaatctttttccaaaagattccataaacacaccagagaatgatcctcattttcttcatggaaatattatgg |
200 |
Q |
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| T |
40852749 |
ttacaagcagaaaatctcataagagggcttaatctttttccaaaagattccataaacacaccagagaatgatcctcattttcttcatggaaatattatgg |
40852650 |
T |
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| Q |
201 |
agaagaagttcactttccctggttttgttg |
230 |
Q |
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| T |
40852649 |
agaagaagttcactttccctggttttgttg |
40852620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 40845964 - 40845852
Alignment:
| Q |
115 |
tctcataagagggcttaatctttttccaaaagattccataaacacaccagagaatgatcctcattttcttcatggaaatattatggagaagaagttcact |
214 |
Q |
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| T |
40845964 |
tctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcact |
40845865 |
T |
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| Q |
215 |
ttccctggttttg |
227 |
Q |
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| T |
40845864 |
ttccccggttttg |
40845852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 40841409 - 40841297
Alignment:
| Q |
115 |
tctcataagagggcttaatctttttccaaaagattccataaacacaccagagaatgatcctcattttcttcatggaaatattatggagaagaagttcact |
214 |
Q |
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| T |
40841409 |
tctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcttgtcctctatcgaaacattgtggagaaaaagttcact |
40841310 |
T |
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| Q |
215 |
ttccctggttttg |
227 |
Q |
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| T |
40841309 |
ttccctggttttg |
40841297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 40841443 - 40841409
Alignment:
| Q |
51 |
atcccacaaacaatgacattctcctttcttcaact |
85 |
Q |
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| T |
40841443 |
atcccaaaaacaatgacattctcctttcttcaact |
40841409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 40845998 - 40845964
Alignment:
| Q |
51 |
atcccacaaacaatgacattctcctttcttcaact |
85 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
40845998 |
atcccaaaaacaatgacattctcctttcttcaact |
40845964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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