View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_high_67 (Length: 226)
Name: NF19860_high_67
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_high_67 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 30420012 - 30420204
Alignment:
| Q |
18 |
ctaagaagggcattggctgaaaggcttggaattgagtaacgagcaaatagttgagcttgtgctgcaatagttttatcttgacgtaaaattatcaaaatcg |
117 |
Q |
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| T |
30420012 |
ctaagaagggcattggctgaaaggcttggaattgagtaacgagcaaatagttgagcttgtgctgcaatagttttgtcttgacgtaaaattatcaaaatcg |
30420111 |
T |
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| Q |
118 |
gttttaagtatgccaaaataaatgataaaggtatactaacaagggtggttgccaacattgctctttgtgtatatattccaaccatatgatatt |
210 |
Q |
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| T |
30420112 |
gttttaagtatgccaaaataaatgataaaggtatactaacaagggtggttgccaacattgctctttgtgtatatattccaaccatatgatatt |
30420204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 30437528 - 30437708
Alignment:
| Q |
28 |
cattggctgaaaggcttggaattgagtaacgagcaaatagttgagcttgtgctgcaatagttttatcttgacgtaaaattatcaaaatcggttttaagta |
127 |
Q |
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| T |
30437528 |
cattggcagaaagacttggaattgaataacgagcaaatagttgagcttgtgttgcaatagttttgtcttgatgtaaaattatcaaaatgggttttaagta |
30437627 |
T |
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| Q |
128 |
tgccaaaataaatgataaaggtatactaacaagggtggttgccaacattgctctttgtgtatatattccaaccatatgata |
208 |
Q |
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| T |
30437628 |
tgcccaaataaatgataagggtatactaacaatggtggtagccaacattgccctttgtgtatatattccaaccatatgata |
30437708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 30381218 - 30381410
Alignment:
| Q |
18 |
ctaagaagggcattggctgaaaggcttggaattgagtaacgagcaaatagttgagcttgtgctgcaatagttttatcttgacgtaaaattatcaaaatcg |
117 |
Q |
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||||||||| ||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| | |||||| | |
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| T |
30381218 |
ctaagaaggccattggcagcaaggctaggaattgagtaacgagcaaataattgagcttgtgctgcaatagtttggtcttgatgtaaaatcaccaaaatag |
30381317 |
T |
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| Q |
118 |
gttttaagtatgccaaaataaatgataaaggtatactaacaagggtggttgccaacattgctctttgtgtatatattccaaccatatgatatt |
210 |
Q |
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||| |||||||||| | |||| ||| || |||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||| |
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| T |
30381318 |
gttctaagtatgcccatataattgacaagggtatactaacaagggtggtaaccaacatggctctttgtgtgtatatgccaaccatatgatatt |
30381410 |
T |
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