View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_high_7 (Length: 536)
Name: NF19860_high_7
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 184 - 518
Target Start/End: Complemental strand, 1766310 - 1765976
Alignment:
| Q |
184 |
tctatgatttctcttccattgttacctataacaactttgtctccactatgagaaccaaccatagatctacaaattggacaaatgggatgcttcaaaagcc |
283 |
Q |
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| T |
1766310 |
tctatgatttatcttccattgttacctataacaactttgtctccactatgagaaccaaccatagatctacaaattggacaaatgggatgcttcaaaagcc |
1766211 |
T |
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| Q |
284 |
attgatccacacattgagcatgaaagctatgcttgcaaataggtaacaatctacatttatccccaatagtgaaattctccaagcaaattgcacaatcaat |
383 |
Q |
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| T |
1766210 |
attgatccacacattgagcatgaaagctatgcttgcaaataggtaacaatctacatttatccccaatagtgaaattctccaagcaaattgcacaatcaat |
1766111 |
T |
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| Q |
384 |
agtgctagttctatgatcaacaacataatcataacatggaagattctccaaaccaattttggaaattcttcttcttcccctatcaatcattactcctctt |
483 |
Q |
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| T |
1766110 |
agtgctagttctatgatcaacaacataatcataacatggaagattctccaaatcaattttggaaattcttcttcttcccctatcaatcattgctccgctt |
1766011 |
T |
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| Q |
484 |
cctcctcttctagaaaaccactcagaaacacatgc |
518 |
Q |
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| T |
1766010 |
cctcctcttctagaaaaccactcagaaacacatgc |
1765976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 1766518 - 1766335
Alignment:
| Q |
1 |
gttgcagtgtcaaaccacttgatagaggccaatgaagagataaatatacacaaactataagaaaattgtattaaaaatgaaaaatatgtttacctcaagg |
100 |
Q |
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| T |
1766518 |
gttgcagtgtcaaaccacttgatagaggccaatgaagagatcaatatacacaaactataagaaaattgtattaaaaatgaaaaatatgtttacctcaagg |
1766419 |
T |
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| Q |
101 |
gtcaagggactacatcacttagatatagagcaatcgagtagctaactaataaaaaactactaactattcaagatggaccacttt |
184 |
Q |
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| T |
1766418 |
gtcaagggactacatcacttagatatagagcaatcgagtagctaactagtaaaaaactactaactattcaagatggacaacttt |
1766335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 178 - 469
Target Start/End: Complemental strand, 1775712 - 1775418
Alignment:
| Q |
178 |
ccactttctatgatttctcttccattgttacctataacaactttgtctccactatgagaaccaaccatagatctacaaattggacaaatgggatgcttca |
277 |
Q |
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| T |
1775712 |
ccactttctatgctttctcttccattgttacctataacaactttgtctccactatgagaaccaaccatagatctacaaattggacaaatggaattcctca |
1775613 |
T |
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| Q |
278 |
aaagccattgatccacacattgagcatgaaagctatgcttgcaaataggtaacaatctacatttatccccaatagtgaaattctccaagcaaattgcaca |
377 |
Q |
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| T |
1775612 |
aaagccattgatccacacattgagcatgaaaattgtgctcacaaataggcaacaatctacacttatccccaatagtgaaattctccaaacaaattgcaca |
1775513 |
T |
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| Q |
378 |
atcaatagtgctagttctatgatc---aacaacataatcataacatggaagattctccaaaccaattttggaaattcttcttcttcccctatcaa |
469 |
Q |
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| T |
1775512 |
atctaaagggttacttccattttcttttgcaacataatcataacatggaagcttctctaaatcaactttggaaaggcttcttcttcccctatcaa |
1775418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 171 - 378
Target Start/End: Complemental strand, 1768969 - 1768762
Alignment:
| Q |
171 |
agatggaccactttctatgatttctcttccattgttacctataacaactttgtctccactatgagaaccaaccatagatctacaaattggacaaatggga |
270 |
Q |
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|||| |||||||||| ||| ||||||||||||||||||||| ||||||||||| | |||||||||||| |||| ||||||||||||| |||||||| ||| |
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| T |
1768969 |
agatagaccactttcaatgctttctcttccattgttacctaaaacaactttgtttgcactatgagaacaaaccctagatctacaaataggacaaattgga |
1768870 |
T |
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| Q |
271 |
tgcttcaaaagccattgatccacacattgagcatgaaagctatgcttgcaaataggtaacaatctacatttatccccaatagtgaaattctccaagcaaa |
370 |
Q |
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| T |
1768869 |
gtcttcaatagccatttatccacacattgagcatgaaaaatgtgcttacaaataggcaacaatctacacttatccccaatagtgaaattctccaaacaaa |
1768770 |
T |
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| Q |
371 |
ttgcacaa |
378 |
Q |
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| T |
1768769 |
ttgcacaa |
1768762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 456
Target Start/End: Complemental strand, 1768730 - 1768678
Alignment:
| Q |
404 |
caacataatcataacatggaagattctccaaaccaattttggaaattcttctt |
456 |
Q |
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| T |
1768730 |
caacataatcataacatggaagcttctccaaatcagttttggaaatgcttctt |
1768678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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