View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_high_71 (Length: 220)
Name: NF19860_high_71
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 54778284 - 54778469
Alignment:
| Q |
20 |
gtcagttcataagtataaagtagcatataatttgatgaggaatatcaatcaacaatgagcaatagcatgtaatttaaatgaagaaaagaacattaatcaa |
119 |
Q |
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| T |
54778284 |
gtcagttcataagtataaagtagcatataatttgatgaggaatatcaatcaacaatgagcaatagcatgtaatttaaatgaagaaaagaacattaatcaa |
54778383 |
T |
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| Q |
120 |
caatatacagttgcatataattgaaaggaaaaaactaataataacggaacaaaggttaaattttagaataactcagatgggatatt |
205 |
Q |
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| T |
54778384 |
caatatacagttgcatataattgaaaggaaaaaactaataataacggaacaaaggttaaattttagaataactcagatgggatatt |
54778469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 54790861 - 54790676
Alignment:
| Q |
20 |
gtcagttcataagtataaagtagcatataatttgatgaggaatatcaatcaacaatgagcaatagcatgtaatttaaatgaagaaaagaacattaatcaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54790861 |
gtcagttcataagtataaagtagcatataatttgatgaggaatatcaatcaacaatgagcaatagcatgtaatttaaatgaagaaaagaacattaatcaa |
54790762 |
T |
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| Q |
120 |
caatatacagttgcatataattgaaaggaaaaaactaataataacggaacaaaggttaaattttagaataactcagatgggatatt |
205 |
Q |
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| T |
54790761 |
caatatacagttgcatataattgaaaggaaaaaactaataataacggaacaaaggttaaattttagaataactcagatgggatatt |
54790676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 52283519 - 52283334
Alignment:
| Q |
20 |
gtcagttcataagtataaagtagcatataatttgatgaggaatatcaatcaacaatgagcaatagcatgtaatttaaatgaagaaaagaacattaatcaa |
119 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| || |||||||||||||||| ||||||||||||||||||||| |
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| T |
52283519 |
gtcagttcgtaagtataaagttgcatataatttgatgaggaatattaatcaacaatgaccagtagcatgtaatttaaaagaagaaaagaacattaatcaa |
52283420 |
T |
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| Q |
120 |
caatatacagttgcatataattgaaaggaaaaaactaataataacggaacaaaggttaaattttagaataactcagatgggatatt |
205 |
Q |
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| T |
52283419 |
caatatacagttgcatataattgaaaggaaaaaactaataataacaaaacaaaggttaaattttcgaataactcagatgggatatt |
52283334 |
T |
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