View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_high_72 (Length: 210)
Name: NF19860_high_72
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_high_72 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 488864 - 488683
Alignment:
| Q |
14 |
aatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttgagacttgttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
488864 |
aatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttgagacttgttt |
488765 |
T |
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| Q |
114 |
ctctgccagctttaaatcttgcaaactatttgagaaagcttctctgcaaagaacatattatgcaaatatccatcattatttt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
488764 |
ctctgccagctttaaatcttgcaaactatttgagaaagcttctctgcaaagaacatattatgcaaatatccatcattatttt |
488683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 42260029 - 42259848
Alignment:
| Q |
14 |
aatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttgagacttgttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42260029 |
aatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttgagacttgttt |
42259930 |
T |
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| Q |
114 |
ctctgccagctttaaatcttgcaaactatttgagaaagcttctctgcaaagaacatattatgcaaatatccatcattatttt |
195 |
Q |
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| T |
42259929 |
ctctgccagctttaaatcttgcaaactatttgagaaagcttctctgcaaagaacatattatgcaaatatccatcattatttt |
42259848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 42280579 - 42280398
Alignment:
| Q |
14 |
aatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttgagacttgttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42280579 |
aatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttgaggattgttt |
42280480 |
T |
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| Q |
114 |
ctctgccagctttaaatcttgcaaactatttgagaaagcttctctgcaaagaacatattatgcaaatatccatcattatttt |
195 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42280479 |
ctctgccagcattaaatcttgcaaactatttgagaaagcttctctgcaaagaacacattatgcaaatatccatcattatttt |
42280398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 42254425 - 42254254
Alignment:
| Q |
17 |
attgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttgagacttgtttctc |
116 |
Q |
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| T |
42254425 |
attgtataaaatatctgcacaacttgttatcaa------tatacaagcccttactacttacatgtgattctctcactttaacctttgagaattgtttctc |
42254332 |
T |
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| Q |
117 |
tgccagctttaaatcttgcaaactatttgagaaagcttctctgcaaagaacatattatgcaaatatccatcattatttt |
195 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||||||||| |
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| T |
42254331 |
tgccacgtttaaatcttgcaaactatttgagaaagcttctctgcaaag-atattttatgcaaatatcaatcattatttt |
42254254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 42313669 - 42313542
Alignment:
| Q |
39 |
cttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttgagacttgtttctctgccagctttaaatcttgcaaa |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||||| |
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| T |
42313669 |
cttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcatgctttgggaattgtttctctgccagctttgaatcttgcaaa |
42313570 |
T |
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| Q |
139 |
ctatttgagaaagcttctctgcaaagaa |
166 |
Q |
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||||||||||| | |||||| ||||||| |
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| T |
42313569 |
ctatttgagaatgtttctctacaaagaa |
42313542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 42268486 - 42268393
Alignment:
| Q |
102 |
tgagacttgtttctctgccagctttaaatcttgcaaactatttgagaaagcttctctgcaaagaacatattatgcaaatatccatcattatttt |
195 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
42268486 |
tgagaattgtttctctgccagcattaaatcttgcaaactatttgagaaagcttctctgcaaagaacacattatgcaaatagccatcattatttt |
42268393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 42308457 - 42308304
Alignment:
| Q |
39 |
cttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttgagacttgtttctctgccagctttaaatcttgcaaa |
138 |
Q |
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||||||||||||| ||| ||| | |||| ||||||| |||||||||| | ||||||||||| | || ||||||||| ||||||||| ||||||||||| |
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| T |
42308457 |
cttgttatcaagaccaacggacagggccttgctacttatatgtgattctttaacttcaagcttcgggaattgtttctcagccagctttgaatcttgcaaa |
42308358 |
T |
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| Q |
139 |
ctatttgagaaagcttctctgcaaagaacatattatgcaaatatccatcattat |
192 |
Q |
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||||||||||| | |||||| ||||||||||| |||||||||| |||||||||| |
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| T |
42308357 |
ctatttgagaatgtttctctacaaagaacataatatgcaaatagccatcattat |
42308304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 42268774 - 42268687
Alignment:
| Q |
14 |
aatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctt |
101 |
Q |
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||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42268774 |
aatattgtataaaacatttgcacaacttgctatcaagattaataaacaagcccttactacttacatgcgattctgtcacttcaagctt |
42268687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 42272546 - 42272446
Alignment:
| Q |
32 |
tgcacaacttgttatcaagatcaatatacaagcccttactac----ttacatgtgattctgtcacttcaagctttgagacttgtttctctgccagcttta |
127 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||||| |||||||||||||| ||||| |
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| T |
42272546 |
tgcacgacttgttatcaagatcaatatacaagcccgtactacttaattacatgccattttgtcacttcaagctttgagaattgtttctctgccaacttta |
42272447 |
T |
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| Q |
128 |
a |
128 |
Q |
| |
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| T |
42272446 |
a |
42272446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 42285580 - 42285478
Alignment:
| Q |
32 |
tgcacaacttgttatcaagatcaatatacaagcccttactactta----catgtgattctgtcacttcaagctttgagacttgtttctctgccagcttta |
127 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||| | || |||| |||||||||||||||||||| |||||||||||||| | ||| |
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| T |
42285580 |
tgcacgacttgttatcaagatcaatatacaagcccgtactacttaattacgtgcgattttgtcacttcaagctttgagaattgtttctctgccaacatta |
42285481 |
T |
|
| Q |
128 |
aat |
130 |
Q |
| |
|
||| |
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| T |
42285480 |
aat |
42285478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 42308943 - 42308879
Alignment:
| Q |
39 |
cttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttg |
103 |
Q |
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|
||||||||||||||||| | ||| ||||| ||||||||||||||||||||| |||||||| |||| |
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| T |
42308943 |
cttgttatcaagatcaacagacatgccctcactacttacatgtgattctgtaacttcaagatttg |
42308879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 42309699 - 42309635
Alignment:
| Q |
39 |
cttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttg |
103 |
Q |
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||||||||||||| ||| | ||| ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
42309699 |
cttgttatcaagaccaacagacatgccctcgctacttacatgtgattctgtaacttcaagctttg |
42309635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 42308754 - 42308690
Alignment:
| Q |
39 |
cttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttg |
103 |
Q |
| |
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||||||||||||| ||| | ||| ||||| |||||||||||||||||||| |||||||| |||| |
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| T |
42308754 |
cttgttatcaagaccaacagacatgccctcgctacttacatgtgattctgtaacttcaagatttg |
42308690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 42309321 - 42309257
Alignment:
| Q |
39 |
cttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctttg |
103 |
Q |
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||||||||||||| ||| | ||| ||||| || ||||||||||||||||| ||||||||||||| |
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| T |
42309321 |
cttgttatcaagaccaacagacatgccctcgctgcttacatgtgattctgtaacttcaagctttg |
42309257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 42309132 - 42309073
Alignment:
| Q |
39 |
cttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaag |
98 |
Q |
| |
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||||||||||||| ||| | ||| ||||| |||||||||||||||||||| |||||||| |
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| T |
42309132 |
cttgttatcaagaccaacagacatgccctcgctacttacatgtgattctgtaacttcaag |
42309073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 42309510 - 42309448
Alignment:
| Q |
39 |
cttgttatcaagatcaatatacaagcccttactacttacatgtgattctgtcacttcaagctt |
101 |
Q |
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||||||||||||| ||| | ||| ||||| |||||||||||||||||||| ||||| ||||| |
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| T |
42309510 |
cttgttatcaagaccaacagacatgccctcgctacttacatgtgattctgtaacttccagctt |
42309448 |
T |
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