View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_high_9 (Length: 513)
Name: NF19860_high_9
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 13 - 499
Target Start/End: Complemental strand, 48455413 - 48454927
Alignment:
| Q |
13 |
aaaatcatcatgagtgtttcgcgaattgtttttggtcatttgatcttccactctagtggaatacatgggtggttacacaagaattacagggaggaggtat |
112 |
Q |
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| T |
48455413 |
aaaatcatcatgagtgtttcgcgaattgtttttggtcatttgatcttccactctagtggaatacatgggtggttacacaagaattacaaggaggaggtat |
48455314 |
T |
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| Q |
113 |
taatgagtaagcatcgtgaatgtttttgtgatagatcttttccctacaagtagcatttctcttagaaaaatgggatgcttttgaggtggttgagttgaaa |
212 |
Q |
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| T |
48455313 |
taatgagtaagcatcgtgaatgtttttgtgatagatcttttccctacaagtagcatttctcttagaaaaatgggatgcttttgaggtggttaagttgaaa |
48455214 |
T |
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| Q |
213 |
agggtcaaaatgagtgatatatacacataagttccatacttaaggccagggaattccaatggaaggtgttggattgtaggttggatgctattagagaggg |
312 |
Q |
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| T |
48455213 |
agggtcaaaatgagtgatatatacacataagttccatacttaaggccagggaattccaatggaaggtgttggattgtaggttggatgctattagagaggg |
48455114 |
T |
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| Q |
313 |
acccagattctctacggtcagggaattctatcgtcaatgcattggagccatttgattgaaatcaaatggtctagatttgatgctcaacaaagaatttaga |
412 |
Q |
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| T |
48455113 |
acccagattctctacggtcagggaattctatcgtcaatgcattggagccatttgattgaaatcaaatggtctagatttgatgctcaacaaagaatttaga |
48455014 |
T |
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| Q |
413 |
acattgtagaacagcaatcacgatcagatgattgaaatcttcttgcaggccactatctgacgtagggaatacatttacgtagaaaat |
499 |
Q |
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| T |
48455013 |
acattgtagaacagcaatcacgatcagatgattgaaatcttcttgcaggccactatctgacgtagggaatacatttacgtagaaaat |
48454927 |
T |
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