View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19860_low_10 (Length: 506)
Name: NF19860_low_10
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_10 |
 | |
|
| [»] chr3 (14 HSPs) |
| |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
| [»] scaffold0603 (1 HSPs) |
| | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 506
Target Start/End: Original strand, 4140590 - 4141081
Alignment:
| Q |
15 |
gagagagcaagttatcaaataactgtcacaaattgggtggtcaaatatcatttctctttttcgtatgaaacaacaataattcaggtatggtagttggtac |
114 |
Q |
| |
|
||||||| ||||| | ||| |||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
4140590 |
gagagagaaagttgttaaagaactgtcacaaattggttgttcaaatatcatttctcttttttgtacaaaacaacaataattaaggtatggtagttggtac |
4140689 |
T |
|
| Q |
115 |
ctccgtgactttaatagtgaagttatctattatttgtttaaacatgtatatccgttgcattccccatttttaaacatgtgtttctattcttgcaaactga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4140690 |
ctccgtgactttaatagtgaagttatctattatttgtttaaacatgtatatccgttgcattccccatttttaaacatgtatttctattcttgcaaactga |
4140789 |
T |
|
| Q |
215 |
ccaacttattgttgtagaagcactccttgcagcttcttttgaggtgttgttggaaaagattgtttctggtgactttgtggacttctttcggagcaccaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4140790 |
ccaacttattgttgtagaagcactccttgcagcttcttttgaggtgttgttggaaaagattgtttctggtgactttgtggacttctttcggagcaccaaa |
4140889 |
T |
|
| Q |
315 |
ctcgatctttcactcttgaaaaagctgaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgtta |
414 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4140890 |
ctcgatctttcactcttgaaaaagcagaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgtta |
4140989 |
T |
|
| Q |
415 |
aagaatggctggatatgctgcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggcattgcggtgcaaagtgaaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4140990 |
aagaatggctggatatgctgcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggcattgcggtgcaaagtgaaa |
4141081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 221 - 495
Target Start/End: Original strand, 4129095 - 4129369
Alignment:
| Q |
221 |
tattgttgtagaagcactccttgcagcttcttttgaggtgttgttggaaaagattgtttctggtgactttgtggacttctttcggagcaccaaactcgat |
320 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||| || |||||| |||||||||||||||||||||| || || || || |||||||||||||| || || |
|
|
| T |
4129095 |
tattgtgggagaagcacttcttgcagcttctttggaagtgttgatggaaaagattgtttctggtgagttcgttgatttatttcggagcaccaagcttgac |
4129194 |
T |
|
| Q |
321 |
ctttcactcttgaaaaagctgaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaat |
420 |
Q |
| |
|
|| |||| ||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||| |
|
|
| T |
4129195 |
gttgcacttttggaaaagctgaagataacaatgttgagtcttcaagctgtacttcatgatgctgaggagaaacagatcaccaaccctgctgtcaagcaat |
4129294 |
T |
|
| Q |
421 |
ggctggatatgctgcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggcattgcggt |
495 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||||| |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
4129295 |
ggctggaaatgctgcatgatgctgtctttgaagctgacgatttatttgacgaaatcaacacggaggcattgcggt |
4129369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 221 - 503
Target Start/End: Complemental strand, 4061504 - 4061222
Alignment:
| Q |
221 |
tattgttgtagaagcactccttgcagcttcttttgaggtgttgttggaaaagattgtttctggtgactttgtggacttctttcggagcaccaaactcgat |
320 |
Q |
| |
|
|||||| ||||||||||| ||| ||||| |||| || |||||||| |||| |||||| ||| || || ||||| ||| ||||||| |||||||| ||| |
|
|
| T |
4061504 |
tattgtggtagaagcacttctttcagctactttggatctgttgttgaaaaaaattgttgctgaagatttcgtggatttcattcggagtaccaaacttgat |
4061405 |
T |
|
| Q |
321 |
ctttcactcttgaaaaagctgaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaat |
420 |
Q |
| |
|
|| |||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||| || ||| |
|
|
| T |
4061404 |
gttgcactgttggaaaagctgaacgtaacactgctgagtctgcaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgtcaagaaat |
4061305 |
T |
|
| Q |
421 |
ggctggatatgctgcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggcattgcggtgcaaagtg |
503 |
Q |
| |
|
|||||||| || ||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
4061304 |
ggctggatctgttgcgagatgctgtctttgaagctgatgatttgtttgacgaaatcaacactgaggctttgcagcgcaaagtg |
4061222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 256 - 503
Target Start/End: Complemental strand, 4081077 - 4080830
Alignment:
| Q |
256 |
aggtgttgttggaaaagattgtttctggtgactttgtggacttctttcggagcaccaaactcgatctttcactcttgaaaaagctgaagataacactgct |
355 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| || | || || |||||||| ||||| || || || |||| ||| |||||||||| ||||||||| | |
|
|
| T |
4081077 |
aggtattgttgcaaaagattgtttctggtgagttcgctgatttatttcggagtaccaagcttgacgttccacttttggaaaagctgaacataacactgat |
4080978 |
T |
|
| Q |
356 |
gagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaatggctggatatgctgcaagatgctgtctatgaagct |
455 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||| || |||||||| |||||||| || ||||||||||| |||||| ||||||||||| ||||||| |
|
|
| T |
4080977 |
gagtctgcaagctgtactgaatgatgctgaggagaagcagatcaccaaccctgctgtcaagcaatggctggatttgctgcgagatgctgtctttgaagct |
4080878 |
T |
|
| Q |
456 |
gacaatttgtttgacgaaatcaacactgaggcattgcggtgcaaagtg |
503 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4080877 |
gataatttgttagacgaaatcaacactgaggcattgcggtgcaaagtg |
4080830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 261 - 503
Target Start/End: Complemental strand, 4115939 - 4115697
Alignment:
| Q |
261 |
ttgttggaaaagattgtttctggtgactttgtggacttctttcggagcaccaaactcgatctttcactcttgaaaaagctgaagataacactgctgagtc |
360 |
Q |
| |
|
|||||| ||||||| |||||| |||| || | ||||||||| |||||| || || || || |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
4115939 |
ttgttgcaaaagatggtttctagtgaattcattgacttcttttggagcatgaagcttgacgttgcactgttggaaaagctgaagataacactgctgagtc |
4115840 |
T |
|
| Q |
361 |
ttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaatggctggatatgctgcaagatgctgtctatgaagctgacaa |
460 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| ||||||||||| || || ||| || ||||||||||||||||||||| |||||| || | |
|
|
| T |
4115839 |
ttcaagctgtactgaatgatgctgaggagaaacagatcactaatcctgctgtcaaggagtggttgaatatgctgcaagatgctgtctttgaagcagaaga |
4115740 |
T |
|
| Q |
461 |
tttgtttgacgaaatcaacactgaggcattgcggtgcaaagtg |
503 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
4115739 |
tttgtttgacgaaatcaacactgagtcattgcggtgtaaagtg |
4115697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 261 - 503
Target Start/End: Complemental strand, 4093195 - 4092953
Alignment:
| Q |
261 |
ttgttggaaaagattgtttctggtgactttgtggacttctttcggagcaccaaactcgatctttcactcttgaaaaagctgaagataacactgctgagtc |
360 |
Q |
| |
|
|||||| ||||||||||||| ||||| || | |||||||||| | || || |||||| || |||| ||| | |||||||| ||||||||| |||||| |
|
|
| T |
4093195 |
ttgttgcaaaagattgtttccggtgagttcatcaacttctttcgaaacatgaagctcgatgttccactgttggataagctgaaaataacactgttgagtc |
4093096 |
T |
|
| Q |
361 |
ttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaatggctggatatgctgcaagatgctgtctatgaagctgacaa |
460 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| | ||| ||||||| || || ||| || ||||||||||||||||||| | |||||||| | |
|
|
| T |
4093095 |
ttcaagctgtactgaatgatgctgaggagaaacagatcgctaattctgctgtcaaggagtggttgaatatgctgcaagatgctgtattcgaagctgaaga |
4092996 |
T |
|
| Q |
461 |
tttgtttgacgaaatcaacactgaggcattgcggtgcaaagtg |
503 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
4092995 |
tttgtttgacgaaattaacactgagtcattgcggtgcagagtg |
4092953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 334 - 491
Target Start/End: Original strand, 4123696 - 4123853
Alignment:
| Q |
334 |
aaaagctgaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaatggctggatatgct |
433 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||| ||| || || |||||| ||| ||| |
|
|
| T |
4123696 |
aaaagctgaaaataacactgctgagtcttcaagctgtactacatgatgctgaggacaaacagatcaccaaccctaatgtcaaggagtggctgcataggct |
4123795 |
T |
|
| Q |
434 |
gcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggcattg |
491 |
Q |
| |
|
||||| |||||| | |||||| || ||||||||||| |||||||||| |||||||| |
|
|
| T |
4123796 |
gcaaggtgctgtatttgaagccgaagatttgtttgaccaaatcaacaccaaggcattg |
4123853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 324 - 484
Target Start/End: Complemental strand, 3914320 - 3914160
Alignment:
| Q |
324 |
tcactcttgaaaaagctgaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaatggc |
423 |
Q |
| |
|
|||||| | ||||||||||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
3914320 |
tcactcctcaaaaagctgaaaataacactgttgagtcttcaagctgtgatgaatgatgctgaggagaaacaaatcaccaaccctgctgttaaacaatggt |
3914221 |
T |
|
| Q |
424 |
tggatatgctgcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacactga |
484 |
Q |
| |
|
||||| || ||||||| ||||||| ||||| ||||||| || |||||||||||||| |
|
|
| T |
3914220 |
tggatgaactaagagatgctctctatgatgctgatgatttgttggatgaaatcaacactga |
3914160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 313 - 496
Target Start/End: Original strand, 3884646 - 3884829
Alignment:
| Q |
313 |
aactcgatctttcactcttgaaaaagctgaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgt |
412 |
Q |
| |
|
|||| ||| |||||||| | ||||||||||| ||||||||| | |||||||||||||| | |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
3884646 |
aacttgatgtttcactcctcaaaaagctgaaaataacactgttaagtcttcaagctgtgttgaatgatgctgaggagaagcaaatcaccaaccctgctgt |
3884745 |
T |
|
| Q |
413 |
taaagaatggctggatatgctgcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggcattgcggtg |
496 |
Q |
| |
|
||||||||||||||| ||| | ||| ||| | ||| ||||| ||||| |||| || |||||||||||||| |||||||| |
|
|
| T |
3884746 |
caaagaatggctggatgagctcacacatgttgtttttgatgctgatgatttgcttgatgagatcaacactgaggctttgcggtg |
3884829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 503
Target Start/End: Complemental strand, 11498441 - 11498196
Alignment:
| Q |
258 |
gtgttgttggaaaagattgtttctggtgactttgtggacttctttcggagcaccaaactcgatctttcactcttgaaaaagctgaagataacactgctga |
357 |
Q |
| |
|
|||||||| || ||| ||| ||||||||| ||||||||| ||| ||||||| || || || ||||| |||||||||||||||||| | || |||||| |
|
|
| T |
11498441 |
gtgttgttagagaagcttgattctggtgagtttgtggacaacttccggagcatgaagcttgacttttcagtcttgaaaaagctgaagaaatcattgctga |
11498342 |
T |
|
| Q |
358 |
gtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaatggctggatatgctgcaagatgctgtctatgaagctga |
457 |
Q |
| |
|
| ||| | ||||||| |||||| |||||||||||| |||| ||| || ||| | ||||| ||||||| |||| | |||||||||||||| | | |
|
|
| T |
11498341 |
gggttccaaatgtacttgatgatgatgaggagaaacagatcataaattctattgtcatagaattgctggatgggctgagatttgctgtctatgaagttca |
11498242 |
T |
|
| Q |
458 |
caatttgtttgacgaaatcaacactgaggcattgcggtgcaaagtg |
503 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
11498241 |
caatttcgttgatgaaatcaacactgaggcgttgcgctgcaaagtg |
11498196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 506
Target Start/End: Complemental strand, 912313 - 912119
Alignment:
| Q |
312 |
aaactcgatctttcactcttgaaaaagctgaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctg |
411 |
Q |
| |
|
||||| ||| ||||||||||| ||||||| || | ||||||| ||||||||||| | |||| ||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
912313 |
aaacttgatgtttcactcttggaaaagctaaaaacaacactgttgagtcttcaatcaatactaaatgatgctgaggagaaacagatcagaaatcatgctg |
912214 |
T |
|
| Q |
412 |
ttaaagaatggctggatatgctgcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggcattgcggtgcaaagtgaaa |
506 |
Q |
| |
|
| ||| ||||| |||| | || ||||| | ||| | ||||||| |||||||||| |||||||||| || ||||| | |||||||||||| |
|
|
| T |
912213 |
tcaaacaatggttggaaaacttgagagatgttatctttcaagctgatgatttgtttgataaaatcaacacagaagcattaagatgcaaagtgaaa |
912119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 11149416 - 11149339
Alignment:
| Q |
347 |
aacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaatggct |
424 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||| ||||| || |||| |||||||||||| ||| ||||||| |
|
|
| T |
11149416 |
aacactgctggttcttcaagctgtgctggatgatgctgatgagaagcagatcaacaatcctgctgtcaaacaatggct |
11149339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 457
Target Start/End: Original strand, 10195157 - 10195290
Alignment:
| Q |
324 |
tcactcttgaaaaagctgaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaatggc |
423 |
Q |
| |
|
|||||||||| ||||||| | ||||||||| | |||||||| ||| || ||||||| |||||||| || |||| |||||||||||| ||| ||||| |
|
|
| T |
10195157 |
tcactcttgaggcagctgaaaacaacactgctcactcttcaagttgtgctggatgatgcggaggagaagcagatcaacaatcctgctgtcaaactatggc |
10195256 |
T |
|
| Q |
424 |
tggatatgctgcaagatgctgtctatgaagctga |
457 |
Q |
| |
|
| ||| || |||||||||||| ||| ||||| |
|
|
| T |
10195257 |
ttgatgacttgaaagatgctgtctttgatgctga |
10195290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 457
Target Start/End: Original strand, 10088287 - 10088407
Alignment:
| Q |
337 |
agctgaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaatggctggatatgctgca |
436 |
Q |
| |
|
||||||| | ||||||||| | |||||||| ||| || ||||||| |||||||| || |||| |||||||||||| ||| |||||| ||| || | |
|
|
| T |
10088287 |
agctgaaaacaacactgctcactcttcaagttgtgctggatgatgcggaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaa |
10088386 |
T |
|
| Q |
437 |
agatgctgtctatgaagctga |
457 |
Q |
| |
|
||||||||||| ||| ||||| |
|
|
| T |
10088387 |
agatgctgtctttgatgctga |
10088407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 221 - 503
Target Start/End: Original strand, 13932522 - 13932804
Alignment:
| Q |
221 |
tattgttgtagaagcactccttgcagcttcttttgaggtgttgttggaaaagattgtttctggtgactttgtggacttctttcggagcaccaaactcgat |
320 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||| ||| |||||||| |||| |||||| ||| || || ||||| ||| ||||||| |||||||| ||| |
|
|
| T |
13932522 |
tattgtggtagaagcacttctttcagcttctttggagctgttgttgaaaaaaattgttgctgaagatttcgtggatttcattcggagtaccaaacttgat |
13932621 |
T |
|
| Q |
321 |
ctttcactcttgaaaaagctgaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaat |
420 |
Q |
| |
|
|| |||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||| |
|
|
| T |
13932622 |
gttgcactgttggaaaagctgaacgtaacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgttaagcaat |
13932721 |
T |
|
| Q |
421 |
ggctggatatgctgcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggcattgcggtgcaaagtg |
503 |
Q |
| |
|
|||||||| || ||| ||||||||||| ||||||||| |||||||||| ||||||||||| ||||| |||||| |||||||| |
|
|
| T |
13932722 |
ggctggatctgttgcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacaccgaggctttgcggcgcaaagtg |
13932804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 313 - 496
Target Start/End: Complemental strand, 14006050 - 14005867
Alignment:
| Q |
313 |
aactcgatctttcactcttgaaaaagctgaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgt |
412 |
Q |
| |
|
|||| ||| |||||||| | ||||||||||| ||||||||| | |||||||||||||| | |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
14006050 |
aacttgatgtttcactcctcaaaaagctgaaaataacactgttaagtcttcaagctgtgttgaatgatgctgaggagaagcaaatcaccaaccctgctgt |
14005951 |
T |
|
| Q |
413 |
taaagaatggctggatatgctgcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggcattgcggtg |
496 |
Q |
| |
|
||||||||||||||| ||| | ||| ||| | ||| ||||| ||||| |||| || |||||||||||||| |||||||| |
|
|
| T |
14005950 |
caaagaatggctggatgagctcacacatgttgtttttgatgctgatgatttgcttgatgagatcaacactgaggctttgcggtg |
14005867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 503
Target Start/End: Original strand, 17311207 - 17311245
Alignment:
| Q |
465 |
tttgacgaaatcaacactgaggcattgcggtgcaaagtg |
503 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17311207 |
tttgacgaaatcaacactgaggcattgcgttgcaaagtg |
17311245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 288 - 490
Target Start/End: Original strand, 17889 - 18091
Alignment:
| Q |
288 |
tttgtggacttctttcggagcaccaaactcgatctttcactcttgaaaaagctgaagataacactgctgagtcttcaagctgtacttcatgatgctgagg |
387 |
Q |
| |
|
|||||| ||||| ||||||||| ||||| || ||||||||||| ||||||| || ||||| |||||||||||||||||||||| |||||||||| | |
|
|
| T |
17889 |
tttgtgaacttcattcggagcaagaaacttgacatttcactcttggaaaagctaaaattaacattgctgagtcttcaagctgtactgaatgatgctgaag |
17988 |
T |
|
| Q |
388 |
agaaacaaatcaccaatcctgctgttaaagaatggctggatatgctgcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggc |
487 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| || |||| ||||| ||||| ||||||||| ||||||| ||| ||||||| || ||||| |
|
|
| T |
17989 |
agaaacaaatcaccaatcctgctgtcaagcaatggctgggtaacctgcgagatgttgtctttgaagctgatgatttgttagacaaaatcaataccgaggc |
18088 |
T |
|
| Q |
488 |
att |
490 |
Q |
| |
|
||| |
|
|
| T |
18089 |
att |
18091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 492
Target Start/End: Complemental strand, 5531 - 5459
Alignment:
| Q |
420 |
tggctggatatgctgcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggcattgc |
492 |
Q |
| |
|
|||||| |||||||| || ||| ||||| ||||| | ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5531 |
tggctgtatatgctggaatatgatgtctttgaagttcacaatttgtttgacgaaatcaaccgtgaggcattgc |
5459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 16446091 - 16446189
Alignment:
| Q |
255 |
gaggtgttgttggaaaagattgtttctggtgactttgtggacttctttcggagcaccaaactcgatctttcactcttgaaaaagctgaagataacactg |
353 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| || ||||| ||||||||||| || || || ||||||||||| ||||||||||| ||||||| |
|
|
| T |
16446091 |
gaggtgttgttagaaaagcttgtttctggtgagttcgtggatgattttcggagcacaaagcttgacgattcactcttgacaaagctgaagaaaacactg |
16446189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 457
Target Start/End: Complemental strand, 50390 - 50257
Alignment:
| Q |
324 |
tcactcttgaaaaagctgaagataacactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaatggc |
423 |
Q |
| |
|
|||||||||| ||||||| | |||||| || | |||||||| ||| || |||||||||||||||| || |||| |||||||||||| ||| ||||| |
|
|
| T |
50390 |
tcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgctgaggagaagcagatcaacaatcctgctgtcaaactatggc |
50291 |
T |
|
| Q |
424 |
tggatatgctgcaagatgctgtctatgaagctga |
457 |
Q |
| |
|
| ||| || |||||||||||| ||| ||||| |
|
|
| T |
50290 |
ttgatgacttgaaagatgctgtctttgatgctga |
50257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 18387275 - 18387331
Alignment:
| Q |
425 |
ggatatgctgcaagatgctgtctatgaagctgacaatttgtttgacgaaatcaacac |
481 |
Q |
| |
|
|||||||||| | ||||||||| ||||| ||| |||||||||||| |||||||||| |
|
|
| T |
18387275 |
ggatatgctgggatatgctgtctttgaagttgataatttgtttgacaaaatcaacac |
18387331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 424
Target Start/End: Original strand, 26906433 - 26906481
Alignment:
| Q |
376 |
atgatgctgaggagaaacaaatcaccaatcctgctgttaaagaatggct |
424 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||||| ||| ||||||| |
|
|
| T |
26906433 |
atgatgcagaggagaaacagatcaacaatcctgctgtcaaacaatggct |
26906481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University