View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_12 (Length: 482)
Name: NF19860_low_12
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 94 - 466
Target Start/End: Original strand, 52583650 - 52584039
Alignment:
| Q |
94 |
atagaaatagcttataccatgtctataaattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaata |
193 |
Q |
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| T |
52583650 |
atagaaatagcttataccatgtctataaattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaata |
52583749 |
T |
|
| Q |
194 |
atttatacataaacacttatttgataaactctagcacttaatt------------cgaatactactcaagtatgatgcaattttctttattagtactagt |
281 |
Q |
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| T |
52583750 |
atttatacataaacacttatttgataaactctagcacttaattaagctttttattcgaatactactcaagtatgatgcaattttctttattagtactagt |
52583849 |
T |
|
| Q |
282 |
gaacataaaatcaggaag-----agaagaccaaccaacctcatccaacaatgaaatgagctttgcaattttgacttgatgttcatgtttgtcagccaata |
376 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583850 |
gaacataaaatcaggaagagaagagaagaccaaccaacctcatccaacaatgaaatgagctttgcaattttgacttgatgttcatgtttgtcagccaata |
52583949 |
T |
|
| Q |
377 |
aatgtccatgaatcctcaactctgctttgagctcagaggagagtgttctagcacctgttctactcccatgaaacaacttctcagcatatt |
466 |
Q |
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| T |
52583950 |
aatgtccatgaatcctcaactctgctttgagctcagaggagagtgttctagcacctgttctactcccatgaaacaacttctcagcatatt |
52584039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 52583376 - 52583443
Alignment:
| Q |
20 |
gatactacttcttccatttgatggtagtacttctcatatctaccctcaacctgaaaattaagcacaac |
87 |
Q |
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| T |
52583376 |
gatactacttcttccatttgatggtagtacttctcatatctaccctcaacctgaaaattaagcacaac |
52583443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 19395153 - 19395216
Alignment:
| Q |
121 |
aattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttt |
185 |
Q |
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| T |
19395153 |
aattctccaagatagctaatgaaaacattt-tatagcttatacaaaaacaatttgattttcgttt |
19395216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 38033934 - 38033892
Alignment:
| Q |
178 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
220 |
Q |
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| T |
38033934 |
ttttgttatataaataacttatacataaacacttatttgataa |
38033892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 43133932 - 43133890
Alignment:
| Q |
178 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
220 |
Q |
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|||||||||| |||||||||||||||||| |||||| |||||| |
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| T |
43133932 |
ttttgttttagaaataatttatacataaatacttatgtgataa |
43133890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 5939051 - 5939015
Alignment:
| Q |
177 |
tttttgttttaaaaataatttatacataaacacttat |
213 |
Q |
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|||||||| ||||||||| |||||||||||||||||| |
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| T |
5939051 |
tttttgttataaaaataacttatacataaacacttat |
5939015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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