View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_18 (Length: 439)
Name: NF19860_low_18
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 99 - 420
Target Start/End: Original strand, 5367825 - 5368146
Alignment:
| Q |
99 |
taattttcagtgctgtcttgcttccttccatgtattgtttctacattctgggttcgcatcaaacattacaggaccannnnnnncaatcacaattcaggga |
198 |
Q |
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| T |
5367825 |
taattttcagtgctgtcttgcttccttccatgtattgtttctacattatgggttcgcatcaaacattacaggaccatttttttcaatcacaattcaggga |
5367924 |
T |
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| Q |
199 |
gaaattggatttccattctaacttccctttatggcttaacgcataacattgctttacacactggaaatgcaattttaggaaagttggtttccctaagtac |
298 |
Q |
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| T |
5367925 |
gaaattggattgcccttctaacttccctttatggcttaacgcataacattgctttgcacacttgaaatgcagttttaggaaagttggtttccctaagtac |
5368024 |
T |
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| Q |
299 |
ttccagaatgaagtgccatttcaacttgctgtgtgcattggccaaatcaactttaatagaaacaagcctttcttaccctttgaaacaaattcttgagcaa |
398 |
Q |
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| T |
5368025 |
ttccagaatgaagtgccatttcaacttccagaatgcattggccaaatcaactttaatagaaacaagcctttcttatcctttgaaacaaattcttgagcaa |
5368124 |
T |
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| Q |
399 |
cagtaatattctcatggaaact |
420 |
Q |
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| T |
5368125 |
cagtaatattctcatggaaact |
5368146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5367752 - 5367834
Alignment:
| Q |
1 |
aaatcattgagtttgttaggcagagcattggcttgagtggtcaataggatcttcatcctattgtattttactttaattttcag |
83 |
Q |
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| T |
5367752 |
aaatcattgagtttgttaggcagagcattggcttgagtggtcaataggatcttcatcctattgtattttactttaattttcag |
5367834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 14115185 - 14115243
Alignment:
| Q |
37 |
gtggtcaataggatcttcatcctattgtattttactttaattttcagaaataatacact |
95 |
Q |
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| T |
14115185 |
gtggacaataggatcttcattatattgtatttttctttgattttcataaataatacact |
14115243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 27578920 - 27578978
Alignment:
| Q |
37 |
gtggtcaataggatcttcatcctattgtattttactttaattttcagaaataatacact |
95 |
Q |
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| T |
27578920 |
gtggacaataggatcttcattctattgtattttcctttgatttccagaaataatacact |
27578978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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