View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_19 (Length: 436)
Name: NF19860_low_19
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Complemental strand, 25660303 - 25659909
Alignment:
| Q |
13 |
aatatcatgaaaatgtggctgaaaacacctaataaacttcaacgaaatcaatgttatcacccccaaaatcgcatgaagtaacgctaacgaagttctatca |
112 |
Q |
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| T |
25660303 |
aatatcatgaaaatgtggctgaaaacacctaataaacttcaacgaaatcaatgttatcacccccaaaatcgcatgaagtaacgctaacgaagttctgtca |
25660204 |
T |
|
| Q |
113 |
tcttctaaaagcgcctggcacgctttgagaataggtaaagcataccgttcatttccaccgacgttgagaaactcgcgcaaaccttgtagcgcgagttcct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25660203 |
tcttctaaaagcgcctggcacgctttgagaataggtaaagcataccgttcattaccaccgacgttaagaaactcgcgcaaaccttgtagcgcgagttcct |
25660104 |
T |
|
| Q |
213 |
ttgtagcgtcagtggaagtaacattgctgagtaacggtaatgcccaaccgatgaaacggtcaaccaaagtgttgagtatgacatgattctgacggccgtt |
312 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25660103 |
ttgtagcatcagtggaagtaacattgctgagtaacggtaatgcccaaccgatgaaacggtcaaccaaagtgttgagtatgacatgattctgacggccgtt |
25660004 |
T |
|
| Q |
313 |
agagttgacaggaattgaacagattacaccgcacagtgctccgtgtgctgtaaccgccgcttgacgcacctcaaacgatctgcaacagaatttca |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25660003 |
agagttgacaggaattgaacagattacaccgcacagtgctccgtgtgctgtaaccgccgcttgacgcacctcaaacgatctgcaacagaatttca |
25659909 |
T |
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