View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_21 (Length: 414)
Name: NF19860_low_21
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 409
Target Start/End: Original strand, 4364527 - 4364918
Alignment:
| Q |
20 |
aatcggagtagacttgaagtggagttcttcctgctagaacaggcactgaatcacatcccaatgaaatgtattctggattcctcctccctaatttgtctgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||| |
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| T |
4364527 |
aatcggagtagacttgaagtggagttcttcctgctagaacaggcactgaatcacatcccaatgagatgtattctggatttcttcttcctaatttgtctgt |
4364626 |
T |
|
| Q |
120 |
gtaaactagctcagggttcttccttatttcttctagcacccatggtggtagaggaatgctaaagagatgcaata-aaacaaaattagtctttgannnnnn |
218 |
Q |
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|||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |||||||| |||| |||||||||||||| |
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| T |
4364627 |
gtaaaccaactcagggttcttcctgatttcttctagcacccatggtggtagaggaatgctataaa-atgcaatacaaaccaaattagtctttgatttttt |
4364725 |
T |
|
| Q |
219 |
nnnnnn--ggtctagttgaatattttgtttaacaagagtgatagatatttgcatacctgcaagagtcaccaacatttccaccacattgatgaaaagacat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364726 |
ttatttttggtctagttgaatattttgtttaacaagagtgatagatatttccatacctgcaagagtcaccaacatttccaccacattgatgaaaagacat |
4364825 |
T |
|
| Q |
317 |
aacaatttgaagcttcaaaccatgtttttgtaccatctgaacaagctcagcataagcttcccaattatacttcattggaccatattcttcgac |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
4364826 |
aacaatttgaagcttcaaaccatgtttttgtaccatctgaacaagttcagcataagcttcccaattatacttcattggaccatctttttcgac |
4364918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 409
Target Start/End: Original strand, 4372119 - 4372511
Alignment:
| Q |
20 |
aatcggagtagacttgaagtggagttcttcctgctagaacaggcactgaatcacatcccaatgaaatgtattctggattcctcctccctaatttgtctgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||| |
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| T |
4372119 |
aatcggagtagacttgaagtggagttcttcctgctagaacaggcactgaatcacatcccaatgagatgtattctggatttcttcttcctaatttgtctgt |
4372218 |
T |
|
| Q |
120 |
gtaaactagctcagggttcttccttatttcttctagcacccatggtggtagaggaatgctaaagagatgcaata-aaacaaaattagtctttgannnnnn |
218 |
Q |
| |
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|||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |||||||| |||| |||||||||||||| |
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| T |
4372219 |
gtaaaccaactcagggttcttcctgatttcttctagcacccatggtggtagaggaatgctataaa-atgcaatacaaaccaaattagtctttgatttttt |
4372317 |
T |
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| Q |
219 |
nnnnnn---ggtctagttgaatattttgtttaacaagagtgatagatatttgcatacctgcaagagtcaccaacatttccaccacattgatgaaaagaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372318 |
tttatttttggtctagttgaatattttgtttaacaagagtgatagatatttccatacctgcaagagtcaccaacatttccaccacattgatgaaaagaca |
4372417 |
T |
|
| Q |
316 |
taacaatttgaagcttcaaaccatgtttttgtaccatctgaacaagctcagcataagcttcccaattatacttcattggaccatattcttcgac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
4372418 |
taacaatttgaagcttcaaaccatgtttttgtaccatctgaacaagttcagcataagcttcccaattatacttcattggaccatctttttcgac |
4372511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 268 - 388
Target Start/End: Complemental strand, 41042773 - 41042653
Alignment:
| Q |
268 |
catacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtaccatctgaacaagctcagc |
367 |
Q |
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|||||||||| || || ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||| |
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| T |
41042773 |
catacctgcaggaatctccaacatttcctccacactgatgaaaagacataacaacttgaagcttcaaaccatgcaattgcaccatctgcacaagctcagc |
41042674 |
T |
|
| Q |
368 |
ataagcttcccaattatactt |
388 |
Q |
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|||||||||||| |||||||| |
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| T |
41042673 |
ataagcttcccagttatactt |
41042653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 41043016 - 41042872
Alignment:
| Q |
31 |
acttgaagtggagttcttcctgctagaacaggcactgaatcacatcccaatgaaatgtattctggattcctcctccctaatttgtctgtgtaaactagct |
130 |
Q |
| |
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||||| || |||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||| ||||||||| || ||||||||||||| | | |
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| T |
41043016 |
acttggaggggagttcttccttttagaacaggcactgaatcacatcccaatgatatgtactcaggatttctcctccctgatctgtctgtgtaaacaatgt |
41042917 |
T |
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| Q |
131 |
cagggttcttccttatttcttctagcacccatggtggtagaggaa |
175 |
Q |
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|||||||||| || || ||||| | ||||||||| |||||||||| |
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| T |
41042916 |
cagggttcttgctgatctcttccatcacccatggaggtagaggaa |
41042872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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