View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_22 (Length: 411)
Name: NF19860_low_22
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 163 - 381
Target Start/End: Original strand, 40834887 - 40835105
Alignment:
| Q |
163 |
atcggatacatattgtgtgtgattaactcaaaatcgcgataatattatcaaattgaatcatgtcagtttcttaaattattatcgatgttgttgtgtttgt |
262 |
Q |
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| T |
40834887 |
atcggatacatattgtatgtgattaacacaataccgtgataatattatcaaattgaatcatgtcagtttcttaaattattatcgatgttgttgtgtttgt |
40834986 |
T |
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| Q |
263 |
ccgtgtcgtgtctggtatctatgtttgggtctatggttcataaatgtttacctttggggatatttacatttacaattttacatttacatctgaatgtcct |
362 |
Q |
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| T |
40834987 |
ccgtgtcgtatccggtatctatgtttgggtctatggttcataaatgtttacctttggggttatttacatttacaattttacatttacatttgaatgtcct |
40835086 |
T |
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| Q |
363 |
tcaaatatatcaattggac |
381 |
Q |
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| T |
40835087 |
tcaaatatatcaattggac |
40835105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 40834661 - 40834799
Alignment:
| Q |
1 |
gtgtgctactctgcagattttaccattaaggtaacagttccaatgatannnnnnnncattaaaccaagtgtctgtttttatattaaaattattgcaaaaa |
100 |
Q |
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| T |
40834661 |
gtgtgctactctgcagattttaccattaaggtaacagttctattgatatttt----cattaaaccaagtgtctgtttttatattaaaattattgcaaaaa |
40834756 |
T |
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| Q |
101 |
taggctgaagggccaatgtgaagtaaaaacttaaatttaaccg |
143 |
Q |
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| T |
40834757 |
taggctgaagggccaatgtgaagtaaaaacttaaatttaaccg |
40834799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 2073984 - 2073940
Alignment:
| Q |
209 |
atcaaattgaatcatgtcagtttcttaaattattatcgatgttgt |
253 |
Q |
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| T |
2073984 |
atcaaattgaattatgttattttctcaaattattatcgatgttgt |
2073940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 16630834 - 16630794
Alignment:
| Q |
212 |
aaattgaatcatgtcagtttcttaaattattatcgatgttg |
252 |
Q |
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| T |
16630834 |
aaattgaattatgtcattttcttaaattattatcggtgttg |
16630794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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