View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_23 (Length: 410)
Name: NF19860_low_23
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 141 - 395
Target Start/End: Complemental strand, 46842499 - 46842246
Alignment:
| Q |
141 |
ttgtttcaggtgaatcattgagtggttttaataaggccacaccaccatgatctcagcaacaatggcagtttttactaaggttactacaaagtagtaccat |
240 |
Q |
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| T |
46842499 |
ttgtttcaggtgaatcattgagtggttttaataaggccacaccaccatgatctcagcaacaatggcagtttttactaaggttactacaaagtagtaccat |
46842400 |
T |
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| Q |
241 |
gttcaattgtttatgttatgttagtagtatatgttactctctctttctttgctggctaggatgtgtgagtggaatttatgatcggctatctctttctatc |
340 |
Q |
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| T |
46842399 |
gttcaattgtttatgttatgttagtagtatatgttactctctctttctttgctggctaggatgtgtgagtggaatttatgatcggctatctctttctatc |
46842300 |
T |
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| Q |
341 |
tttcactctcaaacacacttagcatcaatgaatgaatcagaggtactgtgttatt |
395 |
Q |
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| T |
46842299 |
tttcactctc-aacacacttagcatcaatgaatgaatcagaggtactgtgttatt |
46842246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 46842591 - 46842547
Alignment:
| Q |
50 |
cttataaaaactttgtactacgtgttaatgattgagaattggtgg |
94 |
Q |
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| T |
46842591 |
cttataaaaactttgtactacgtgttaatgattgagaattggtgg |
46842547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46842646 - 46842609
Alignment:
| Q |
1 |
aagaaagtggtttgtgattggagtaactggttggtggg |
38 |
Q |
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| T |
46842646 |
aagaaagtggtttgtgattggagtaattggttggtggg |
46842609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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