View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19860_low_24 (Length: 396)
Name: NF19860_low_24
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 30121059 - 30120707
Alignment:
| Q |
8 |
tcaaaccaaaaacatcatattacatattcaaagagactaataaaggaagtggaaccattttaaagtcgtcattatgaagtgaaaacaaa-aacatgcaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
30121059 |
tcaaaccaaaaacatcatattacatattcaaagagactaataaaggaagtggaaccattttaaactcgtcattatgaagtgaaaacaaacaacatgcaag |
30120960 |
T |
|
| Q |
107 |
aaacataagaaaagaagcgtgtaccttaaaaaacacagagacaagacacaaagcaaggaaactagagactggttttttggttgcttttgtgatgaagaaa |
206 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30120959 |
aaatataagaaaagaagcgt--accttaaaaaacaaagagacaagacacgaagcaaagaaacta-agactggttttttggttgcttttgtgatgaagaaa |
30120863 |
T |
|
| Q |
207 |
tgaaagttgcaaaggttaatagaaagagtggaagacttttctaatacattttggttttggtcaaaaaagtggaactcactagacaccactttctcctctt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30120862 |
tgaaagttgcaaaggttaatagaaagagtggaagacttttctaatacattttggttttggtcaaaaaagtggaactcactagacaccactttctcctctt |
30120763 |
T |
|
| Q |
307 |
accaattccatttattcaattttttccatatacaaatataaaatttaccaagtcca |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30120762 |
accaattccatttattcaattttttccatatacaaatataaaatttaccaagtcca |
30120707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University