View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19860_low_25 (Length: 393)

Name: NF19860_low_25
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19860_low_25
NF19860_low_25
[»] chr3 (3 HSPs)
chr3 (19-383)||(44673795-44674170)
chr3 (87-165)||(34626692-34626770)
chr3 (107-163)||(29570766-29570822)
[»] chr8 (9 HSPs)
chr8 (47-161)||(39916626-39916740)
chr8 (100-150)||(5921237-5921287)
chr8 (100-150)||(5984657-5984707)
chr8 (282-383)||(39916426-39916527)
chr8 (100-150)||(5887265-5887315)
chr8 (100-150)||(5949129-5949179)
chr8 (100-150)||(5960394-5960444)
chr8 (100-150)||(5843126-5843176)
chr8 (100-150)||(5849868-5849918)
[»] chr7 (2 HSPs)
chr7 (88-147)||(45676073-45676132)
chr7 (59-150)||(48892585-48892676)
[»] chr1 (3 HSPs)
chr1 (86-152)||(16127397-16127463)
chr1 (86-152)||(16138907-16138973)
chr1 (56-164)||(51044457-51044565)
[»] chr4 (1 HSPs)
chr4 (59-151)||(43560512-43560604)
[»] scaffold0008 (1 HSPs)
scaffold0008 (68-147)||(237133-237212)
[»] chr2 (1 HSPs)
chr2 (100-150)||(42789007-42789057)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 44674170 - 44673795
Alignment:
Q  19 gtgttcatacttgtttccaagtaagctgtggaggttaatgataagatcatcttcttgttcagtgaagtttcctctcttgagatcaggtcttaggtaattt 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44674170 gtgttcatacttgtttccaagtaggctgtggaggttaatgataagatcatcttcttgttcagtgaagtttcctctcttgagatcaggtcttaggtaattt 44674071  T
Q  119 atccatctcaatctgcaactcttgccacatcttagcaagcctgcaatgatcaaaaccatatatatat------------tgatttaaaattctacatat- 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||            ||||||||||||| ||||||     
T  44674070 atccatctcaatctgcaactcttgccacatcttagcaagcctgcaatgatcacaaccatatatatatatatatatatattgatttaaaattcaacatatg 44673971  T
Q  206 --ctataagaaatggaattaagtatatatacatttaattaattctatatagtgggaaattaattaacataaagtatgttatataccagcagcttttggaa 303  Q
      ||||||||||||||||||||| ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44673970 atctataagaaatggaattaagtgta----catttaattaattctatatagtgggaaattaattaacataaagtatgttatataccagcagcttttggaa 44673875  T
Q  304 gagacctccaacaaccttccccatgaagcttgatgtagttaatgagacgttcatcttcttcttttgtccaagcacctttg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44673874 gagacctccaacaaccttccccatgaagcttgatgtagttaatgagacgttcatcttcttcttttgtccaagcacctttg 44673795  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 34626692 - 34626770
Alignment:
Q  87 ttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatcttagcaagcctgcaat 165  Q
    |||||||||| | ||||||||| || || || |||||||||||||| |||||||| ||||||||| |||| ||||||||    
T  34626692 ttcctctcttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatctttgcaaccctgcaat 34626770  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 29570822 - 29570766
Alignment:
Q  107 cttaggtaatttatccatctcaatctgcaactcttgccacatcttagcaagcctgca 163  Q
    |||||||||||| ||||||||||||||||||| || ||||| |||| ||| ||||||    
T  29570822 cttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgca 29570766  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 39916740 - 39916626
Alignment:
Q  47 tggaggttaatgataagatcatcttcttgttcagtgaagtttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccac 146  Q
    |||||| | |||||||| ||||||||||  | |||||| ||||| | ||| ||||||||||| || ||||| ||||||||||||||||| || || ||||    
T  39916740 tggaggctgatgataagttcatcttcttcgtgagtgaaatttccacgcttaagatcaggtctgagataattgatccatctcaatctgcagctttttccac 39916641  T
Q  147 atcttagcaagcctg 161  Q
    |||||  ||||||||    
T  39916640 atcttgccaagcctg 39916626  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 5921237 - 5921287
Alignment:
Q  100 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 150  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  5921237 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 5921287  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 5984657 - 5984707
Alignment:
Q  100 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 150  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  5984657 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 5984707  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 383
Target Start/End: Complemental strand, 39916527 - 39916426
Alignment:
Q  282 tatataccagcagcttttggaagagacctccaacaaccttccccatgaagcttgatgtagttaatgagacgttcatcttcttcttttgtccaagcacctt 381  Q
    |||||||| || ||||| |||||||| | ||| |||||||| || ||  | |||||||||||||| |||||||| |||||||| || | |||||||||||    
T  39916527 tatatacctgcggctttaggaagagaacgccagcaaccttctccttgttgtttgatgtagttaataagacgttcgtcttcttccttagaccaagcacctt 39916428  T
Q  382 tg 383  Q
    ||    
T  39916427 tg 39916426  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 5887265 - 5887315
Alignment:
Q  100 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 150  Q
    |||||||||||| |||||||||||||| |||||||||||||| || |||||    
T  5887265 atcaggtcttagataatttatccatcttaatctgcaactctttccgcatct 5887315  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 5949129 - 5949179
Alignment:
Q  100 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 150  Q
    |||||||||||| |||||||||||||| ||||| |||||||| ||||||||    
T  5949129 atcaggtcttagataatttatccatcttaatcttcaactctttccacatct 5949179  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 5960394 - 5960444
Alignment:
Q  100 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 150  Q
    |||||||||||| |||||||||||||| ||||| |||||||| ||||||||    
T  5960394 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 5960444  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 5843126 - 5843176
Alignment:
Q  100 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 150  Q
    |||||||||||| |||||||||||||| ||||| ||||| || ||||||||    
T  5843126 atcaggtcttagataatttatccatcttaatctacaactttttccacatct 5843176  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 5849868 - 5849918
Alignment:
Q  100 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 150  Q
    |||||||||||| |||||||||||||| ||||| ||||| || ||||||||    
T  5849868 atcaggtcttagataatttatccatcttaatctacaactttttccacatct 5849918  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 45676073 - 45676132
Alignment:
Q  88 tcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccaca 147  Q
    ||||||||| | |||||| ||||| |||||||||||||||||||| |||||||| |||||    
T  45676073 tcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccaca 45676132  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 48892585 - 48892676
Alignment:
Q  59 ataagatcatcttcttgttcagtgaagtttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 150  Q
    |||||||||||||||| |  ||| | |||||||||||| | ||| |||||||| || || |||||||| | ||||||||| || ||||||||    
T  48892585 ataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 48892676  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 16127397 - 16127463
Alignment:
Q  86 tttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatctta 152  Q
    ||||||||||| | ||||| |||||  ||||| |||||||||||||| |||||||| ||||||||||    
T  16127397 tttcctctcttaatatcagttcttaaataattaatccatctcaatctacaactctttccacatctta 16127463  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 16138907 - 16138973
Alignment:
Q  86 tttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatctta 152  Q
    ||||||||||| | ||||||| |||  || || |||||||||||||| |||||||| ||||||||||    
T  16138907 tttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatctta 16138973  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 51044565 - 51044457
Alignment:
Q  56 atgataagatcatcttcttgttcagtgaagtttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatcttagca 155  Q
    ||||||||||| || |||||||  | |||  |||||||||| | |||||| || |  || ||||||||||||||||| || ||||| ||||| ||| |||    
T  51044565 atgataagatcttcctcttgttttgagaacattcctctcttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccacacctttgca 51044466  T
Q  156 agcctgcaa 164  Q
    | |||||||    
T  51044465 accctgcaa 51044457  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 43560512 - 43560604
Alignment:
Q  59 ataagatcatcttcttgttcagtgaagtttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatctt 151  Q
    |||||||| ||||||||||  | |||  |||||||||| | |||||| || |  || ||||||||||||||||| |||||||| |||||||||    
T  43560512 ataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctt 43560604  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 237133 - 237212
Alignment:
Q  68 tcttcttgttcagtgaagtttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccaca 147  Q
    ||||||| || ||||||||||||||| |||| || ||||||||  ||||| | ||| |||||||| |||||||| |||||    
T  237133 tcttcttcttgagtgaagtttcctcttttgatattaggtcttaaataattcagccacctcaatctacaactcttcccaca 237212  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 42789007 - 42789057
Alignment:
Q  100 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 150  Q
    |||||||||||  ||||||||||||||||| |||||||| || ||||||||    
T  42789007 atcaggtcttaaataatttatccatctcaacctgcaactttttccacatct 42789057  T

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