View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19860_low_26 (Length: 383)
Name: NF19860_low_26
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 98099 - 98447
Alignment:
| Q |
14 |
caaaggtacaacaagaaattcatatattatattggttaaatggagtagcgtgtcgtgattggtgaaggtgaatatttgatagaagaagtagccatgagtt |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
98099 |
caaaggtacaacaagaaattcatatattatattggttaaatggagtagcgtgtcgtgattggtgaaggtgaatatttgatagaagaagtagccatgagtt |
98198 |
T |
|
| Q |
114 |
tggcaattaacacggagagagtggaaggaagaaaatgcttctgggcaatgaagattgagaacgagatgaagaaaatggttatgttctacacttagaattt |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
98199 |
tggcaattaacacagagagagtggaaggaagaaaatgcttctgggcaatgaagattgagaacgagatgaagaaaatggttatgttctacacttagaattt |
98298 |
T |
|
| Q |
214 |
atggcttacatcaaagggcgtaaaagtaattattcaacttacnnnnnnnnnnngttatgtgggacaaaatacaannnnnnnngcaatctactattgaagg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |
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| T |
98299 |
atggcttacatcaaagggcgtaaaagtaattattcaacttac--tttttttttgttatgtgggacaaaatacaattttttttgcaatatactattgaagg |
98396 |
T |
|
| Q |
314 |
tcattttaaggggactatgagtgcacccttgaaaatagggaccatattagg |
364 |
Q |
| |
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||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
98397 |
tcattttaaggggactacgagtgcacccttaaaaatagggaccatattagg |
98447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 50638791 - 50638849
Alignment:
| Q |
306 |
attgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattagg |
364 |
Q |
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||||||||||||||| | ||||| ||| |||||||||| |||||||||||||||||||| |
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| T |
50638791 |
attgaaggtcattttgaagggaccatgggtgcacccttaaaaatagggaccatattagg |
50638849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 50638024 - 50637974
Alignment:
| Q |
313 |
gtcattttaaggggactatgagtgcacccttgaaaatagggaccatattag |
363 |
Q |
| |
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|||||||||| ||||| |||||||||||||| |||||||||||||| |||| |
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|
| T |
50638024 |
gtcattttaaagggaccatgagtgcacccttaaaaatagggaccatgttag |
50637974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 24975388 - 24975424
Alignment:
| Q |
104 |
gccatgagtttggcaattaacacggagagagtggaag |
140 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
24975388 |
gccatgagtttggcaattaacatagagagagtggaag |
24975424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 363
Target Start/End: Complemental strand, 24948765 - 24948406
Alignment:
| Q |
14 |
caaaggtacaacaagaaattcatatattatattggtta-------aatggagtagcgtgtcgtgattggtgaaggtgaatatttgatagaagaagtagcc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
24948765 |
caaaggtacaacaagaaattcatatattatatgggttatgggttaaatggagtagcgtgtggtgattggtgaaggtgagtatttgatagaagaagtagcc |
24948666 |
T |
|
| Q |
107 |
atgagtttggcaattaacacggagagagtggaaggaagaaaatgcttctgggcaatgaagattgagaacgagatgaagaaaatggttatgttctacactt |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||| |
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| T |
24948665 |
atgagtttggcaattaacacagagagagtggaaggaagaaaatgcttctaggcaatgaagattgagaacgagaggaagaaaatggttcttttctacactt |
24948566 |
T |
|
| Q |
207 |
agaa-tttatggcttacatcaaagggcgtaaaagtaattattcaacttac-nnnnnnnnnnngttatgtgggacaaaatacaa-nnnnnnnngcaatcta |
303 |
Q |
| |
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||| |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |
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| T |
24948565 |
ggaattttaaggcttacatcaaagggcgtaaaagtaattactcaacttacttttttttttttgttatgtgggacaaaatacaatttttttttgcaatcta |
24948466 |
T |
|
| Q |
304 |
ctattgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattag |
363 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
24948465 |
ctattgaaggtcattttaaggggaccatgaatgcacccttaaaaatagggaccatattag |
24948406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 24949185 - 24949245
Alignment:
| Q |
304 |
ctattgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattagg |
364 |
Q |
| |
|
||||||||||| ||||||| ||||| ||| |||||||||| |||||||||||||||||||| |
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|
| T |
24949185 |
ctattgaaggttattttaaagggaccatgggtgcacccttaaaaatagggaccatattagg |
24949245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 363
Target Start/End: Complemental strand, 40829144 - 40828789
Alignment:
| Q |
14 |
caaaggtacaacaagaaattcatatattatattggtta-------aatggagtagcgtgtcgtgattggtgaaggtgaatatttgatagaagaagtagcc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
40829144 |
caaaggtacaacaagaaattcatatattatatgggttatgggttaaatggagtagcgtgtggtgattggtgaaggtgagtatttgatagaagaagtagcc |
40829045 |
T |
|
| Q |
107 |
atgagtttggcaattaacacggagagagtggaaggaagaaaatgcttctgggcaatgaagattgagaacgagatgaagaaaatggttatgttctacactt |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
40829044 |
atgagtttggcaattaacacagagagagtggaaggaagaaaatgcttctaggcaatgaagattgagaacgagaggaagaaaatggttttgttctacactt |
40828945 |
T |
|
| Q |
207 |
-agaatttatggcttacatcaaagggcgtaaaagtaattattcaacttacnnnnnnnnnnngttatgtgggacaaaatacaannnnnnnngcaatctact |
305 |
Q |
| |
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| | |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
40828944 |
gaaattttaaggcttacatcaaagggcgtaaaagtaattactcaacttac-ttttttttttgttatgtgggacaaaatacaatttttttttcaatctact |
40828846 |
T |
|
| Q |
306 |
attgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattag |
363 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
40828845 |
attgaaggtcattttaaggggac-ctgaatgcacccttaaaaatagggaccatattag |
40828789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 40829563 - 40829623
Alignment:
| Q |
304 |
ctattgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattagg |
364 |
Q |
| |
|
||||||||||| ||||||| ||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
40829563 |
ctattgaaggttattttaaagggaccatgggtgcacccttaaaaatagggaccatattagg |
40829623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 11744551 - 11744908
Alignment:
| Q |
14 |
caaaggtacaacaagaaattcatatattatattggtt-------aaatggagtagcgtgtcgtgattggtgaaggtgaatatttgatagaagaagtagcc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
11744551 |
caaaggtacaacaagaaattcatatattatatgggttatgggttaaatggagtagcgtgtggtgattggtgaaggtgagtatttgatagaagaagtaacc |
11744650 |
T |
|
| Q |
107 |
atgagtttggcaattaacacggagagagtggaaggaagaaaatgcttctgggcaatgaagattgagaacgagatgaagaaaatggttatgttctacactt |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||| |||||||||||| |
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|
| T |
11744651 |
atgagtttggcaattaacacagagagagtggaaggaagaaaatgcttctaggcaatgaagattgaaagcgagaggaagaaaatggttctgttctacactt |
11744750 |
T |
|
| Q |
207 |
agaa-tttatggcttacatcaaagggcgtaaaagtaattattcaacttacnnnnnnnnnnngttatgtgggacaaaatacaa-nnnnnnnngcaatctac |
304 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
11744751 |
ggaattttaaggcttacatcaaagggcgtaaaagtaattactcaacttac-ttttttttttgttatgtgggacaaaatacaatttttttttgcaatctac |
11744849 |
T |
|
| Q |
305 |
tattgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattag |
363 |
Q |
| |
|
| |||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||| |
|
|
| T |
11744850 |
tgttgaaggtcattttaaggggaccatgaatacacccttaaaaatagggaccatattag |
11744908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 11744132 - 11744072
Alignment:
| Q |
304 |
ctattgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattagg |
364 |
Q |
| |
|
||||||||||| ||||||| ||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
11744132 |
ctattgaaggttattttaaagggaccatgggtgcacccttaaaaatagggaccatattagg |
11744072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 16798225 - 16798283
Alignment:
| Q |
306 |
attgaaggtcattttaaggggactatgagtgcacccttgaaaatagggaccatattagg |
364 |
Q |
| |
|
||||||||||||||| | ||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
16798225 |
attgaaggtcattttgaagggaccatgggtgcacccttaaaaatagggaccatattagg |
16798283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 16797458 - 16797408
Alignment:
| Q |
313 |
gtcattttaaggggactatgagtgcacccttgaaaatagggaccatattag |
363 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||||||||| |||| |
|
|
| T |
16797458 |
gtcattttaaagggaccatgagtgcacccttaaaaatagggaccatgttag |
16797408 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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