View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19860_low_27 (Length: 383)
Name: NF19860_low_27
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_27 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 3637111 - 3637493
Alignment:
| Q |
1 |
caaaaaggtttgttctcacgatcaatataatcttttgtcctttttcttaatagttatgcataaaacttctgataactgtgtatgtgtctatccctttacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3637111 |
caaaaaggtttgttctcacgatcaatataatcttttgtcctttttcttaatagttatgcataaaacctctgataactgtgtatgtgtctatccctttacc |
3637210 |
T |
|
| Q |
101 |
ttttctttgcttcccgctttatgctactgaggattcatataaacaattaagttgcaattccctacaagtatgatttacgcagttcctcaatttcaaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3637211 |
ttttctttgcttcccgctttatgctactgaggattcatataaacaattaagttgcaattccctacaagtatgatttacgcagttcctcaatttcaaaata |
3637310 |
T |
|
| Q |
201 |
tttgatgaatcacaaagtagttggacttaataatctgtaaatagacgctttacacatgggcttatgctatttaaggagaatagttgagaaaatttatcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3637311 |
tttgatgaatcacaaagtagttggacttaataatctgtaaatagacgctttacacatgggcttatgctatttaaggagaatagttgagaaaatttatcta |
3637410 |
T |
|
| Q |
301 |
agtgaaggaatataaaaatattccccctaaaacaatactatttaaaataatactcaacgctgcctctcatactagtgaataga |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3637411 |
agtgaaggaatataaaaatattccccctaaaacaatactatttaaaataatactcaacactgcctctcatactagtgaataga |
3637493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University