View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19860_low_28 (Length: 380)
Name: NF19860_low_28
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_28 |
 | |
|
| [»] scaffold1295 (2 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 22 - 369
Target Start/End: Complemental strand, 21630688 - 21630340
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaat |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21630688 |
taatacgtaacttatcacatatttttgttcacaataatgctaactcaatcatacaatacattagaatacaatgggttatgatcccactctagacaaaaat |
21630589 |
T |
|
| Q |
122 |
aacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21630588 |
aacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaa |
21630489 |
T |
|
| Q |
222 |
aacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta-cnnnnnn |
320 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21630488 |
aacattccataatttcttgcaacatcatcattggatgcatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtatttttttt |
21630389 |
T |
|
| Q |
321 |
nnnngaattctcactcaccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21630388 |
ttttgaattcccactcaccctttataaccacatcttatgccacattcat |
21630340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 369
Target Start/End: Complemental strand, 53828200 - 53827852
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaa |
120 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
53828200 |
taatacgtaacttctcacattttttttcttcacaataatgataactcaatcatacaatgcattagaatacaatgagttatgatctcactctagacaaaaa |
53828101 |
T |
|
| Q |
121 |
-taacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactatt |
219 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
53828100 |
ataacaaagatgttacgttaatgaacagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacagtttatgcacctatcaaactatt |
53828001 |
T |
|
| Q |
220 |
aaaacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtacnnnnn |
319 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53828000 |
caaacgttccgtaatttcttacaccatcatcattggatgcatctcttaacattccttcaattataacctacaaaatggaaaaatttaaagtgta-ttttt |
53827902 |
T |
|
| Q |
320 |
nnnnngaattctcactcaccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
53827901 |
ttttataattcccactcaccgtttataaccacaacttatgccacattcat |
53827852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 369
Target Start/End: Original strand, 46094751 - 46095097
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaa- |
119 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46094751 |
taatacgtaacctctcacattttttttcttcacaataatgctaactcaattatacaatgcattagaatacaatgggttatgatctcactctagacaaaaa |
46094850 |
T |
|
| Q |
120 |
ataacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactatt |
219 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46094851 |
ataacaaagatgttacgttaatgagcataaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacct-acaaactatt |
46094949 |
T |
|
| Q |
220 |
aaaacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtacnnnnn |
319 |
Q |
| |
|
||| ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46094950 |
caaatgttctgtaatttcttacaccatcatcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaaatttaaagtgtatttttt |
46095047 |
T |
|
| Q |
320 |
nnnnngaattctcactcaccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
46095048 |
ttttataattcccactcaccgtttataaccacaacttatgccacattcat |
46095097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 148 - 313
Target Start/End: Complemental strand, 2502670 - 2502508
Alignment:
| Q |
148 |
aaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatc |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
2502670 |
aaacatcattgtttttctatagccatattttaagaatctaatagtaacggtttatgcacct-acaaactattcaaatgttctgtaatttcttacaccatc |
2502572 |
T |
|
| Q |
248 |
atcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2502571 |
atcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaaatttaaagtgta |
2502508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 105 - 260
Target Start/End: Original strand, 20039097 - 20039253
Alignment:
| Q |
105 |
tcactctagacaaaa-ataacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatg |
203 |
Q |
| |
|
||||||||||||||| |||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20039097 |
tcactctagacaaaaaataacaaagacgttaagttaatgaacagaaacaccattgtttttctatagccatgttttaagaatctaatagtaatcgtttatg |
20039196 |
T |
|
| Q |
204 |
cacctaacaaactattaaaacattccataatttcttacaacatcatcattggatgta |
260 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
20039197 |
cacctaacaaactattcaaacattccataatctcttacactatcatcattggatgta |
20039253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 20039007 - 20039081
Alignment:
| Q |
43 |
tttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaa |
117 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| |||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
20039007 |
ttttttttcacaataatgctaactcaatcatacaatgcattagaatataatgggttatcaactcactctagacaa |
20039081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 34969287 - 34969153
Alignment:
| Q |
179 |
aagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatcatcattggatgtat---ctt-ttaacattcc |
274 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || |||||||||||||||| |||| ||||| | ||||||||||||| || ||| |||||| ||| |
|
|
| T |
34969287 |
aagaatctaatagtaactttttatgcacctaaaaatctattaaaacattccaatattttttacatcttcatcattggatggatgtacttcttaacaatcc |
34969188 |
T |
|
| Q |
275 |
ttcaattataacctacaaaatggaaaattttaaag |
309 |
Q |
| |
|
|| || ||||| |||||||||||||| ||||||| |
|
|
| T |
34969187 |
tttaaatataatttacaaaatggaaaaatttaaag |
34969153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 2502757 - 2502679
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggtta |
99 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
2502757 |
taatacgtaacctctcacattttttttcttcacaataatgctaactcaattatacaatgcattagaatacaatgggtta |
2502679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 242
Target Start/End: Original strand, 26442835 - 26442865
Alignment:
| Q |
212 |
aaactattaaaacattccataatttcttaca |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26442835 |
aaactattaaaacattccataatttcttaca |
26442865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 369
Target Start/End: Original strand, 20039786 - 20039877
Alignment:
| Q |
278 |
aattataacctacaaaatggaaaattttaaagtgtacnnnnnnnnnngaattctcactc-accctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| |||||| ||||| |||||||||||| ||| |||||||||||||||| |
|
|
| T |
20039786 |
aattataacctacaaaatggaaaaatttaaagcgtac-tttttttatgaattcacactcaaccctttataacaacaacttatgccacattcat |
20039877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 22 - 369
Target Start/End: Original strand, 4140541 - 4140889
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaat |
121 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4140541 |
taatatgtaacttatcacatatttttgatcacaataatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaat |
4140640 |
T |
|
| Q |
122 |
aacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaa |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4140641 |
aacaaagaagttacgttaatgaatagaaacatcattgtttttctaaatctatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaa |
4140740 |
T |
|
| Q |
222 |
aacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtac-nnnnnn |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4140741 |
aacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtacttttttt |
4140840 |
T |
|
| Q |
321 |
nnnngaattctcactcaccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4140841 |
ttttgaattcccactcaccctttataaccacatcttatgccacattcat |
4140889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 22 - 369
Target Start/End: Original strand, 10188604 - 10188953
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaat |
121 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10188604 |
taatatgtaacttatcacatatttttgttcacaatcatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaat |
10188703 |
T |
|
| Q |
122 |
aacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
10188704 |
aacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacaatttatgcacttaacaaactattaa |
10188803 |
T |
|
| Q |
222 |
aacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtac--nnnnn |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10188804 |
aacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtacttttttt |
10188903 |
T |
|
| Q |
320 |
nnnnngaattctcactcaccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10188904 |
tttttgaattcccacccaccctttataaccacatcttatgccacattcat |
10188953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 314
Target Start/End: Complemental strand, 916891 - 916596
Alignment:
| Q |
22 |
taatacgtaacttatcacat-atttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaa |
120 |
Q |
| |
|
||||| |||||||||||||| |||||| |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
916891 |
taatatgtaacttatcacattatttttcttcacaataatgctaaatcaatcatacaatgcattagaatacaatgagttatgatctcactctaaacaaaaa |
916792 |
T |
|
| Q |
121 |
--taacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactat |
218 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
916791 |
aataacaaagacgttacattaatgaacagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacgatttttgcacctaacaaactat |
916692 |
T |
|
| Q |
219 |
taaaacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtac |
314 |
Q |
| |
|
| |||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
916691 |
tcaaacgttccataatttcttacaccatcatcattggatgtatctcttaacagtccttaaattataacctacaaaatggaaaaatttaaagtgtac |
916596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 131 - 313
Target Start/End: Original strand, 12277923 - 12278105
Alignment:
| Q |
131 |
gttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattcca |
230 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||| |
|
|
| T |
12277923 |
gttacgttaatgaacagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttttgcacccaacaaactattcaaaggttcca |
12278022 |
T |
|
| Q |
231 |
taatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12278023 |
taatttcttacaccatcatcattggatgtatctcttaacattccttaaattataacctacaaaatggaaaaatttaaagtgta |
12278105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 152 - 369
Target Start/End: Original strand, 28845413 - 28845625
Alignment:
| Q |
152 |
atcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatcatca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||| |||||||| |
|
|
| T |
28845413 |
atcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacct-acaaactattcaaatgttctgtaatttcttacaccatcatca |
28845511 |
T |
|
| Q |
252 |
ttggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtacnnnnnnnnnngaattctcactcaccctttataaccac |
351 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
28845512 |
ttggatgtatc--ttaacattccttcagttataacctacaaaatggaaaaatttaaagtgta--ttttttttataattcacactcaccgtttataaccac |
28845607 |
T |
|
| Q |
352 |
atcttatgccacattcat |
369 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
28845608 |
aacttatgccacattcat |
28845625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 28845344 - 28845400
Alignment:
| Q |
43 |
tttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggtta |
99 |
Q |
| |
|
||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
28845344 |
tttttcttcacaataatgctaactcaattatacaatgcattagaatacaatgggtta |
28845400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 25 - 313
Target Start/End: Original strand, 43566336 - 43566627
Alignment:
| Q |
25 |
tacgtaacttatcacat-atttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaa--at |
121 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
43566336 |
tacgtaacttatcacattatttttcttcacaataatgctaaatcaatcatacaatgcattagaatacaatgggttatgatctcactctaaacaaaaaaat |
43566435 |
T |
|
| Q |
122 |
aacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaa |
221 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
43566436 |
aacaaagatgttacgttaatgaacagaaacatcatattttttctatagccatgttctaagaatctaatagtaacggtttatgcacccaacaaactattca |
43566535 |
T |
|
| Q |
222 |
aacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||| |||||||||| | |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43566536 |
aacgttccataatttcttacaccatcatcattggatgtatctcttaacattccctaaattataacctacaaaatggaaaaatttaaagtgta |
43566627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 25 - 313
Target Start/End: Original strand, 29457572 - 29457857
Alignment:
| Q |
25 |
tacgtaacttatcacat-atttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaa--at |
121 |
Q |
| |
|
|||||| |||||||||| |||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
29457572 |
tacgtatcttatcacattatttttcttcacaataatgctaaatcaatcatacaatgcattagaatacaatgggttatgatctcactctaaacaaaaaaat |
29457671 |
T |
|
| Q |
122 |
aacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaa |
221 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| | |
|
|
| T |
29457672 |
aacaaagatgttacgttaatgaacagaaacatcataatttttctatagccatgttctaagaatctaatagtgacggtttatgcacccaacaaactattca |
29457771 |
T |
|
| Q |
222 |
aacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
29457772 |
aacgttccataatttcttacaccatcatcattggatgtatctcttatcattccttaaat------ctacaaaatggaaaaatttaaagtgta |
29457857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 148 - 313
Target Start/End: Complemental strand, 7571759 - 7571597
Alignment:
| Q |
148 |
aaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatc |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
7571759 |
aaacatcattgtttttctatagccatattttaagaatctaatagtaacggtttatgcacct-acaaactattcaaatgttctgtaatttcttacaccatc |
7571661 |
T |
|
| Q |
248 |
atcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7571660 |
atcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaaatttaaagtgta |
7571597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 148 - 313
Target Start/End: Complemental strand, 16666354 - 16666192
Alignment:
| Q |
148 |
aaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatc |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
16666354 |
aaacatcattgtttttctatagccatattttaagaatctaatagtaacggtttatgcacct-acaaactattcaaatgttctgtaatttcttacaccatc |
16666256 |
T |
|
| Q |
248 |
atcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16666255 |
atcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaaatttaaagtgta |
16666192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 7571846 - 7571768
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggtta |
99 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
7571846 |
taatacgtaacctctcacattttttttcttcacaataatgctaactcaattatacaatgcattagaatacaatgggtta |
7571768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 16666441 - 16666363
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggtta |
99 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
16666441 |
taatacgtaacctctcacattttttttcttcacaataatgctaactcaattatacaatgcattagaatacaatgggtta |
16666363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1295 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold1295
Description:
Target: scaffold1295; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 2078 - 1780
Alignment:
| Q |
18 |
aatataatacgtaacttatcacatat-ttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagaca |
116 |
Q |
| |
|
||||||||||| ||||| |||||| | |||| |||| | ||||| ||||||||||||||||| ||||| | ||||||| ||||||| ||||||||||||| |
|
|
| T |
2078 |
aatataatacgcaacttctcacatttatttttttcataataatgttaactcaatcatacaatgcattatagtacaatgagttatgaactcactctagaca |
1979 |
T |
|
| Q |
117 |
aaaa-taacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaac |
215 |
Q |
| |
|
|||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
1978 |
aaaaataacaaagacgttacgttaatgaacagaaacatcattgtttttctatagccatgttttaagaatctaatggcaacggtttatgcacctaacaaac |
1879 |
T |
|
| Q |
216 |
tattaaaacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtac |
314 |
Q |
| |
|
|||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1878 |
tattcaaacatttcataatttcttacaccatcatcattggatatatcttttaacattactttaattataacctacaaaatggaaaaatttaaagtgtac |
1780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1295; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 369
Target Start/End: Complemental strand, 1757 - 1723
Alignment:
| Q |
335 |
tcaccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
1757 |
tcaccctttataaccacaacttatgccacattcat |
1723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 369
Target Start/End: Original strand, 35872612 - 35872958
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaa-a |
120 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
35872612 |
taatacgtaacctctcacatttttttcttcacaacaatgctaactcaatcatacaatgcattagaaaataatgggttatgatctcactctagacaaaaaa |
35872711 |
T |
|
| Q |
121 |
taacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactatta |
220 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
35872712 |
taacaaagatgttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacagtttatgcacctatcaaactattc |
35872811 |
T |
|
| Q |
221 |
aaacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtacnnnnnn |
320 |
Q |
| |
|
|||| || |||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||| |||||||||||||| |||||||| || |
|
|
| T |
35872812 |
aaacgttatgtaatttcttacaccatcaccattgaatgtatc--ttaacattccttcaattataacttacaaaatggaaaaatttaaagtatatattttt |
35872909 |
T |
|
| Q |
321 |
nnnngaattctcactcaccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
35872910 |
tttataattcccactcaccgtttataaccacaacttatgccacattcat |
35872958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 43 - 369
Target Start/End: Original strand, 48268554 - 48268876
Alignment:
| Q |
43 |
tttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaa-ataacaaagaagttacgttaat |
141 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
48268554 |
tttttcttcacaataatgctaactcaatcatacaatgcattagaatacaatgggttatgatcttactctagacaaaaaataacaaagatgttacgttaat |
48268653 |
T |
|
| Q |
142 |
gaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttac |
241 |
Q |
| |
|
||| | ||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||| |||| || ||||||||||| |
|
|
| T |
48268654 |
gaacataaatgtcattgtttttctatagccatgttttaagaatataatggtaacggtttatgcatctatcaaactattcaaacgttatgtaatttcttac |
48268753 |
T |
|
| Q |
242 |
aacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtacnnnnnnnnnngaattctcactcaccct |
341 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |
|
|
| T |
48268754 |
accatcatcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaattttaaagtgta---tttttttataattcccactcaccgt |
48268848 |
T |
|
| Q |
342 |
ttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
48268849 |
ttataaccacaacttatgccacattcat |
48268876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 148 - 313
Target Start/End: Original strand, 52352200 - 52352362
Alignment:
| Q |
148 |
aaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatc |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
52352200 |
aaacatcattgtttttctatagccatattttaagaatctaatagtaacggtttatgcacct-acaaactattcaaatgttctgtaatttcttacaccatc |
52352298 |
T |
|
| Q |
248 |
atcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52352299 |
atcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaaatttaaagtgta |
52352362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 52352113 - 52352191
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggtta |
99 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
52352113 |
taatacgtaacctctcacattttttttcttcacaataatgctaactcaattatacaatgcattagaatacaatgggtta |
52352191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 369
Target Start/End: Original strand, 13892 - 14242
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaa |
120 |
Q |
| |
|
||||||| ||||| |||||| ||||| |||| | ||||||||||||||||||||||| ||||| | ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
13892 |
taatacgcaacttctcacattttttttcttcataataatgctaactcaatcatacaatgcattacagtacaatgagttatgaactcactctagacaaaaa |
13991 |
T |
|
| Q |
121 |
-taacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactatt |
219 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||| |
|
|
| T |
13992 |
ataacaaagactttacgttaatgaacagaaacatcattgtttttctatagccatgttttaagaatctaatggcaacggtttatacacctaacaaactatt |
14091 |
T |
|
| Q |
220 |
aaaacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtacnnnnn |
319 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| | |
|
|
| T |
14092 |
caaacatttcataatttcttacaccatcatcattggatgtatcttttaacattacttcaattataacatacaaaatggaaaaatttaaagtgtccttttt |
14191 |
T |
|
| Q |
320 |
nnnnngaattctcact---caccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
14192 |
ttta--aattctcactaatcaccctttataaccacaacttatgccacattcat |
14242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 43 - 369
Target Start/End: Complemental strand, 39064903 - 39064581
Alignment:
| Q |
43 |
tttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaa--taacaaagaagttacgttaa |
140 |
Q |
| |
|
||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
39064903 |
tttttcttcacaataatgctaactcaattatacaatgcattagaatacaatgggttatgatctcactctagacaaaaaaataacaaagatgttacgttaa |
39064804 |
T |
|
| Q |
141 |
tgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttctta |
240 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| ||| ||| |||||||||| |
|
|
| T |
39064803 |
tgagcataaacatcattgtttttctatagccatgttttaagaatctaatagtaatggtttaagcacct-acaaactattcaaatgttctgtaatttctta |
39064705 |
T |
|
| Q |
241 |
caacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtacnnnnnnnnnngaattctcactcaccc |
340 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
39064704 |
caccatcatcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaattttaaagtgta---tttttttataattcccactcaccg |
39064610 |
T |
|
| Q |
341 |
tttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
39064609 |
tttataaccacaacttatgccacattcat |
39064581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 22 - 369
Target Start/End: Complemental strand, 5766184 - 5765840
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaa |
120 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5766184 |
taatacgtaacctctcacattttttttcttcacaataatgctaaatcaattatacaatgcattagaatacaatgggttatgatctcactctagacaaaaa |
5766085 |
T |
|
| Q |
121 |
-taacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactatt |
219 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
5766084 |
ataacaaagatgttacgttaatgagcataaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacct-acaacctatt |
5765986 |
T |
|
| Q |
220 |
aaaacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtacnnnnn |
319 |
Q |
| |
|
||| ||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5765985 |
caaatgttctgcaatttcttacaccatcatcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaaatttaaagtgta--tttt |
5765890 |
T |
|
| Q |
320 |
nnnnngaattctcactcaccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
5765889 |
ttttataattcccactcaccgtttataaccacaacttatgccacattcat |
5765840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 43 - 313
Target Start/End: Complemental strand, 47231694 - 47231423
Alignment:
| Q |
43 |
tttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaa-taacaaagaagttacgttaat |
141 |
Q |
| |
|
||||| |||||| ||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
47231694 |
tttttcttcacaataatgttaattcaatcatacaatgcattagaatacaatgtgttatgatctcactctagagaaaaaataacaaagatgttacgttaat |
47231595 |
T |
|
| Q |
142 |
gaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttac |
241 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || ||||||||| |||| |||| |||||| |||| |
|
|
| T |
47231594 |
gaacagaaacatcattgtttttctatagtcatgttttaagaatctaatagtaatagtttatgcatgtatcaaactattcaaacgttccgtaattttttac |
47231495 |
T |
|
| Q |
242 |
aacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47231494 |
accatcatcattggatgtatctcctaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
47231423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 108 - 369
Target Start/End: Complemental strand, 9935020 - 9934759
Alignment:
| Q |
108 |
ctctagacaaaaat-aacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcac |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9935020 |
ctctagacaaaaaacaacaaagaagttacgttaatgaacaaaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcat |
9934921 |
T |
|
| Q |
207 |
ctaacaaactattaaaacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaatttta |
306 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
9934920 |
ctaacaaactattaaaagattccataattttttacaccatcatcattggatgtatctcttaacattttttcaattataacctacaaaatggaaaaattta |
9934821 |
T |
|
| Q |
307 |
aagtgtacnnnnnnnnnngaattctcactcaccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
||| |||| |||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9934820 |
aagcgtac-tttttttttgaattcccactcaccctttataaccacagcttatgccacattcat |
9934759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 44 - 281
Target Start/End: Original strand, 5433630 - 5433877
Alignment:
| Q |
44 |
ttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaa--ataacaaagaagttacgttaat |
141 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
5433630 |
tttttttcacaaaaatgctaactcaatcatacaatgcataagagtacaatgggttatgaactcactctagacaaaaaaataacaaagacgttacgttaat |
5433729 |
T |
|
| Q |
142 |
gaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttac |
241 |
Q |
| |
|
||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5433730 |
gaacaaaaacatcattgtttttctataaccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattcaaacattccataatttcttac |
5433829 |
T |
|
| Q |
242 |
a--------acatcatcattggatgtatcttttaacattccttcaatt |
281 |
Q |
| |
|
| | ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
5433830 |
actatcatcatatcatcatttgatgtatctcttaacattccttcaatt |
5433877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 148 - 313
Target Start/End: Complemental strand, 25417243 - 25417081
Alignment:
| Q |
148 |
aaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatc |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
25417243 |
aaacatcattgtttttctatagccatattttaagaatctaatagtaacggtttatgcacct-acaaactattcaaatgttctgtaatttcttacaccatc |
25417145 |
T |
|
| Q |
248 |
atcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25417144 |
atcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaaatttaaagtgta |
25417081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 25417330 - 25417252
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggtta |
99 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
25417330 |
taatacgtaacctctcacattttttttcttcacaataatgctaactcaattatacaatgcattagaatacaatgggtta |
25417252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 5433891 - 5433938
Alignment:
| Q |
267 |
aacattccttcaattataacctacaaaatggaaaattttaaagtgtac |
314 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5433891 |
aacatttcttcaattacaacctacaaaatggaaaattttaaagtgtac |
5433938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 332 - 369
Target Start/End: Original strand, 5433962 - 5433999
Alignment:
| Q |
332 |
cactcaccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5433962 |
cactcaccctttataaccacaacttatgccacattcat |
5433999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 63 - 313
Target Start/End: Complemental strand, 37297961 - 37297713
Alignment:
| Q |
63 |
aactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaa-taacaaagaagttacgttaatgaatagaaacatcattgttt |
161 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
37297961 |
aactcaatcatacaatgcattagaatacaatgggttatgatctcactctagacaaaaaataacaaagatgttacgttaatgaacagaaacatcattgttt |
37297862 |
T |
|
| Q |
162 |
ttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatcatcattggatgtat |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||||||| | ||| |||||||||||||| |
|
|
| T |
37297861 |
ttctatagccatgttttaagaatctaatagtaacgatttatgcacctaacaaattattcaaaca---aataatttcttataccataatcattggatgtat |
37297765 |
T |
|
| Q |
262 |
cttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
37297764 |
ctcttaacattccttcaattataacctacaaaatgaaaaaatttaaagtgta |
37297713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 22 - 369
Target Start/End: Original strand, 36993494 - 36993838
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaa- |
119 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36993494 |
taatacgtaacctctcacattttttttcttcacaataatgctaattcaattatacaatgcattagaatacaatgggttatgatctcactctagacaaaaa |
36993593 |
T |
|
| Q |
120 |
ataacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactatt |
219 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
36993594 |
ataacaaagatgttacgttaatgagcataaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacct-acaacctatt |
36993692 |
T |
|
| Q |
220 |
aaaacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgtacnnnnn |
319 |
Q |
| |
|
||| ||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36993693 |
caaatgttctgcaatttcttacaccatcatcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaaatttaaagtgta--tttt |
36993788 |
T |
|
| Q |
320 |
nnnnngaattctcactcaccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
36993789 |
ttttataattcccactcaccgtttataaccacaacttatgccacattcat |
36993838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 22 - 299
Target Start/End: Original strand, 39625718 - 39625994
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttgttcacagtaatgctaactcaatcatacaatacattagaatacaatgggttatgatctcactctagacaaaaa- |
120 |
Q |
| |
|
||||||||||||| |||| | ||||| | || | ||| ||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
39625718 |
taatacgtaacttctcacttttttttct-cataataacgctaactcaatcatacaatccattagaatacaacgagttatgaactcactctagacaaaaaa |
39625816 |
T |
|
| Q |
121 |
taacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactatta |
220 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
39625817 |
taacaaagatgtt-cgttaatgaacagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatggatctaacaaactattt |
39625915 |
T |
|
| Q |
221 |
aaacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatggaa |
299 |
Q |
| |
|
||||||||||||||||| |||| | |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39625916 |
aaacattccataatttcatacaccgtcatcattggatgtatctcttaacattccttcaattataacctataaaatggaa |
39625994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 43 - 369
Target Start/End: Complemental strand, 22910511 - 22910183
Alignment:
| Q |
43 |
tttttgttcacagtaatgctaactcaatcatacaata---cattagaatacaatgggttatgatctcactctagacaaaaa-taacaaagaagttacgtt |
138 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| ||| |
|
|
| T |
22910511 |
tttttcttcacaataatgctaactcaatcatacaataatacattagaatacaatgg-ttatgatctcactctagacaaaaaataacaaagacgttatgtt |
22910413 |
T |
|
| Q |
139 |
aatgaatagaaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttct |
238 |
Q |
| |
|
|||||| | ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
22910412 |
aatgaaaataaacatcgttgtttttccatagccatgttttaa-aatctaatagtaacggtttatgcacctaacacgctatttagacattccataatttct |
22910314 |
T |
|
| Q |
239 |
tacaacatcatcattggatgtatcttttaacattccttcaattataacctacaaaatg-gaaaattttaaagtgtacnnnnnnnnnngaattctcactca |
337 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| |||||| |
|
|
| T |
22910313 |
tacatcatcatcattggatgtatctcttaacattccttcaattataacctacaaaatgaaaaaaatttaaagtgtactttttttttt-aattcacactca |
22910215 |
T |
|
| Q |
338 |
ccctttataaccacatcttatgccacattcat |
369 |
Q |
| |
|
||||| ||||||||| |||| ||||||||||| |
|
|
| T |
22910214 |
cccttgataaccacaacttacgccacattcat |
22910183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 148 - 313
Target Start/End: Original strand, 13788703 - 13788865
Alignment:
| Q |
148 |
aaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatc |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
13788703 |
aaacatcattgtttttctatagccatattttaagaatctaatagtaacggtttatgcacct-acaaactattcaaatgttctgtaatttcttacaccatc |
13788801 |
T |
|
| Q |
248 |
atcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13788802 |
atcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaaatttaaagtgta |
13788865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 148 - 313
Target Start/End: Complemental strand, 25805439 - 25805277
Alignment:
| Q |
148 |
aaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatc |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
25805439 |
aaacatcattgtttttctatagccatattttaagaatctaatagtaacggtttatgcacct-acaaactattcaaatgttctgtaatttcttacaccatc |
25805341 |
T |
|
| Q |
248 |
atcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25805340 |
atcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaaatttaaagtgta |
25805277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 155 - 309
Target Start/End: Original strand, 47310481 - 47310635
Alignment:
| Q |
155 |
attgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatcatcattg |
254 |
Q |
| |
|
|||||||| | |||||||| |||||| |||| ||||| ||||| | ||||||| ||||||| ||||||||| || |||||||| ||||||||||| |
|
|
| T |
47310481 |
attgttttacaatagccatattttaataatcaaatagcaacggatgatgcacccaacaaacgattaaaacacctgtcaaattcttacaccatcatcattg |
47310580 |
T |
|
| Q |
255 |
gatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaag |
309 |
Q |
| |
|
||| |||| ||||||||||| ||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
47310581 |
gatacatctcttaacattcctccaaatataacctacaaaattgaaaaatttaaag |
47310635 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 13788616 - 13788694
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggtta |
99 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
13788616 |
taatacgtaacctctcacattttttttcttcacaataatgctaactcaattatacaatgcattagaatacaatgggtta |
13788694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 25805526 - 25805448
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggtta |
99 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
25805526 |
taatacgtaacctctcacattttttttcttcacaataatgctaactcaattatacaatgcattagaatacaatgggtta |
25805448 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 83 - 299
Target Start/End: Original strand, 18884878 - 18885094
Alignment:
| Q |
83 |
tagaatacaatgggttatgatctcactctagacaaaaa-taacaaagaagttacgttaatgaatagaaacatcattgtttttctatagccatgttttaag |
181 |
Q |
| |
|
|||||||||| | ||||||| |||| |||||||||||| ||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18884878 |
tagaatacaacgagttatgaactcattctagacaaaaaataacaaagatgtt-cgttaatgaacagaaacatcattgtttttctatagccatgttttaag |
18884976 |
T |
|
| Q |
182 |
aatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatcatcattggatgtatcttttaacattccttcaatt |
281 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18884977 |
aatctaatagtaacggtttatggatctaacaaactatttaaacattccataatttcatacaccgtcatcattggatgtatctcttaacattccttcaatt |
18885076 |
T |
|
| Q |
282 |
ataacctacaaaatggaa |
299 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18885077 |
ataacctacaaaatggaa |
18885094 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 148 - 313
Target Start/End: Complemental strand, 13431121 - 13430959
Alignment:
| Q |
148 |
aaacatcattgtttttctatagccatgttttaagaatctaatagtaacggtttatgcacctaacaaactattaaaacattccataatttcttacaacatc |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
13431121 |
aaacatcattgtttttctatagccatattttaagaatctaatagtaacggtttatgcacct-acaaactattcaaatgttctgtaatttcttacaccatc |
13431023 |
T |
|
| Q |
248 |
atcattggatgtatcttttaacattccttcaattataacctacaaaatggaaaattttaaagtgta |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13431022 |
atcattggatgtatc--ttaacattccttcaattataacctacaaaatggaaaaatttaaagtgta |
13430959 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 13431208 - 13431130
Alignment:
| Q |
22 |
taatacgtaacttatcacatatttttg-ttcacagtaatgctaactcaatcatacaatacattagaatacaatgggtta |
99 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
13431208 |
taatacgtaacctctcacattttttttcttcacaataatgctaactcaattatacaatgcattagaatacaatgggtta |
13431130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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