View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_29 (Length: 378)
Name: NF19860_low_29
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 10495220 - 10494868
Alignment:
| Q |
18 |
tgaaccaatggagcagattcgcaacgtctggatatctggtctcttggatccttcagaaatgaggatgactgagagatactggctatacgccggtgatatt |
117 |
Q |
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| T |
10495220 |
tgaaccaatggagcagattcgcaacgtctggatatctggtctcttggatccttccgaaatgaggatgactgagagatactggctatacgccggtgatatt |
10495121 |
T |
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| Q |
118 |
caaaagagcaaggaagctcaaaaagaaacaaagaaaattgacaagttctataagtcttatcataaaaatcagtcatggcggaatcttttcaatcagaatc |
217 |
Q |
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| T |
10495120 |
caaaagagcaaggaagctcaaaaagaaacaaagaaaattgaaaagttctataagtcttatcataaaaatcagtcatggcggaatcttttcaatcagaatc |
10495021 |
T |
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| Q |
218 |
agggaggtcgacgcaatgttcgaatgaactggatgtctaatcccatttcccattctatccctgcagatatcaccttcttcaacagacaaaactataaggt |
317 |
Q |
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| T |
10495020 |
agggaggtcgacaccatgttcgaatgaactggatgtctaatcccatttcccattctatccctgcagatatcaccttcttcaacagacaaaactataaggt |
10494921 |
T |
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| Q |
318 |
actaatttaatcatacactttcctttcctgcattaattcacattttctctgct |
370 |
Q |
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| T |
10494920 |
actaatttaatcatacactttcttttcctgcattagttcacattttctctgct |
10494868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 10509421 - 10509329
Alignment:
| Q |
22 |
ccaatggagcagattcgcaacgtctggatatctggtctcttggatccttcagaaatgaggatgactgagagatactggctatacgccggtgat |
114 |
Q |
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| T |
10509421 |
ccaatgaagcagattcgaaacatctggatctctggtctccttgatccttccaaggtgaggatgactgagagatactggctctacaccggtgat |
10509329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 7476237 - 7476285
Alignment:
| Q |
317 |
tactaatttaatcatacactttcctttcctgcattaattcacattttct |
365 |
Q |
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||||||||||||| || | |||||||| |||||||| |||||||||||| |
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| T |
7476237 |
tactaatttaatcttagagtttccttttctgcattatttcacattttct |
7476285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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