View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_3 (Length: 608)
Name: NF19860_low_3
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 12 - 590
Target Start/End: Complemental strand, 37600683 - 37600098
Alignment:
| Q |
12 |
atgtaatagttataaatttatgttatgacaacaaaatgtgaaagcctcatagcttctttgacatggattgaaaccgtagagtcatcggnnnnnnnn-ttc |
110 |
Q |
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| T |
37600683 |
atgtaatagttataaatttatgttatgacaacaaaatgttaaagcctcatagcttctttgacatggattgaaaccgtagagtcatcggaaaaaaaaattc |
37600584 |
T |
|
| Q |
111 |
ttcttaaaccattggtttttaagggaagagactctaataattgtagctcaatgatgaagtaaatatagtctaatcaacgattgttgcaccataaattaaa |
210 |
Q |
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| T |
37600583 |
ttcttaaaccattggtttttaagggaagagactctaataattgtagctcaatgatgaagtaaatatagtctaatcaatgattgttgcaccataaattaaa |
37600484 |
T |
|
| Q |
211 |
ctcaaattcttttaaacgatttgtcctttagtgaacacattaaccacttgagtttaattatttatttagagtcaacaaaattttatttcgttcactcctg |
310 |
Q |
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| T |
37600483 |
ctcgaattctttcaaacgatttatcttttagtgaacacattaaccacttgagtccaattatttatttagagtcaacaaaattttatttcggtcagtcctg |
37600384 |
T |
|
| Q |
311 |
catggagtaattgacatcaaagataacaactagccaa------ccccgatgaggaactctttgatttgagagtttagtttgattaggtgagtagatatat |
404 |
Q |
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| T |
37600383 |
cacagagtaatagacatcaaagataacaactagccaagaaaatccccgatgagggactctttgatttgagagtttagtttgattaggtgagtagatatat |
37600284 |
T |
|
| Q |
405 |
gattttaggtgagcaaacagagaacacacccttttgctttcaccactagctgctccgtgtgaacagtataaaaaatgttctctcctgtatactcacataa |
504 |
Q |
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| T |
37600283 |
gattttaggtgagtaaacagagaacacacccttttgctttcaccactagctgctccgtgtgaacagtataaaaaatgttctctcttgtatactcacataa |
37600184 |
T |
|
| Q |
505 |
agatccttttccaaagatatatgatttcttgctacgaatcaccgtttcatttgtataaattgacactacaaatattttcttcatct |
590 |
Q |
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| T |
37600183 |
agatccttttccaaagatatatgatttcttgctacgaatcaccatttcatttgtataaattgacactacaaatattttcttcatct |
37600098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 484 - 585
Target Start/End: Complemental strand, 37606516 - 37606415
Alignment:
| Q |
484 |
ctctcctgtatactcacataaagatccttttccaaagatatatgatttcttgctacgaatcaccgtttcatttgtataaattgacactacaaatattttc |
583 |
Q |
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| T |
37606516 |
ctctcttgcatacccacatatagatccttctccaaagatatatgatttcttgctaccaatctccattgcatttgtataaattgatactacaaatattttc |
37606417 |
T |
|
| Q |
584 |
tt |
585 |
Q |
| |
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|| |
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|
| T |
37606416 |
tt |
37606415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 567
Target Start/End: Complemental strand, 34751057 - 34750991
Alignment:
| Q |
502 |
taaagatccttttcc-aaagatatatgatttcttgctacgaatcaccgtttcatttgtataaattga |
567 |
Q |
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| T |
34751057 |
taaagatccttttcccaaagatatatgatttcttgctaccaatctccatagcatttgtataaattga |
34750991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 3678483 - 3678451
Alignment:
| Q |
203 |
aaattaaactcaaattcttttaaacgatttgtc |
235 |
Q |
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| T |
3678483 |
aaatcaaactcaaattcttttaaacgatttgtc |
3678451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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