View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19860_low_32 (Length: 352)
Name: NF19860_low_32
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 118 - 337
Target Start/End: Complemental strand, 12868431 - 12868211
Alignment:
| Q |
118 |
tataaataaatcaaggaattcttggatcgtagttaggttgattgtgatagattattaataattgcatatatataaaaccttgttaaaaaatttcatcaaa |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12868431 |
tataaataaatcaagtaattcttggatcgtagttaggttgattgtgatagcttattaataattgcatatatataaaatcttgttaaaaaatttcatcaaa |
12868332 |
T |
|
| Q |
218 |
aagtaaataaatcttgttc-aaacaacttcaatccatatagttcggaatgagaaataaaacataaaacaatgagactaacacataactctaatttagcaa |
316 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12868331 |
aagtaaataaatcttgttcaaaacaacttcaatccatatagttcggaatgagaaataaaacataaaacaatgagactaacacataactctaatttagcaa |
12868232 |
T |
|
| Q |
317 |
ctgtttcttgaacttgtaact |
337 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12868231 |
ctgtttcttgaacttgtaact |
12868211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 12869871 - 12869746
Alignment:
| Q |
1 |
atcagaagcagtttcctcccccaatctattttttacatctttgtagtgcacatctaggtcaagcctacgtaaagtaaaagtcaaatggtaactatagata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12869871 |
atcagaagcagtttcctcccccaatctattttttacatctttgcagtgcacatctaggtcaaccctacgtaaagtaaaagtcaaatggtaactatagata |
12869772 |
T |
|
| Q |
101 |
tatggattgttatagcttataaataa |
126 |
Q |
| |
|
||||||| |||||||||||||||||| |
|
|
| T |
12869771 |
tatggatggttatagcttataaataa |
12869746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 12964971 - 12965046
Alignment:
| Q |
237 |
aaacaacttcaatccatatagttcggaatgagaaataaaacataaaacaatgagactaacacataactctaattta |
312 |
Q |
| |
|
|||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12964971 |
aaacaatttcaatccatgtagtttggaataagaaataaaacataaaacaatgagactaacacataactctaattta |
12965046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 15136718 - 15136655
Alignment:
| Q |
237 |
aaacaacttcaatccatatagttcggaatgagaaataaaacataaaacaatgagactaacacat |
300 |
Q |
| |
|
||||||||||||| ||| | ||| ||||||| ||||||||||||||||||||||| | |||||| |
|
|
| T |
15136718 |
aaacaacttcaattcatgttgtttggaatgaaaaataaaacataaaacaatgagaatgacacat |
15136655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University