View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19860_low_34 (Length: 349)

Name: NF19860_low_34
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19860_low_34
NF19860_low_34
[»] chr1 (7 HSPs)
chr1 (82-332)||(3568721-3568974)
chr1 (96-332)||(3118116-3118361)
chr1 (21-81)||(3712508-3712568)
chr1 (13-73)||(49915581-49915642)
chr1 (20-73)||(52764395-52764448)
chr1 (36-81)||(16632323-16632368)
chr1 (13-82)||(46671520-46671589)
[»] chr5 (9 HSPs)
chr5 (13-76)||(24535056-24535119)
chr5 (20-73)||(4819606-4819659)
chr5 (20-73)||(24442056-24442110)
chr5 (37-86)||(17549145-17549194)
chr5 (13-81)||(37022970-37023038)
chr5 (35-81)||(4428909-4428955)
chr5 (20-50)||(43540949-43540979)
chr5 (35-80)||(14028325-14028370)
chr5 (37-81)||(31736925-31736969)
[»] scaffold0015 (1 HSPs)
scaffold0015 (20-77)||(64430-64487)
[»] chr7 (8 HSPs)
chr7 (20-73)||(21524368-21524421)
chr7 (35-81)||(1076094-1076140)
chr7 (20-73)||(18774512-18774565)
chr7 (37-86)||(15234939-15234988)
chr7 (36-83)||(49017058-49017105)
chr7 (35-80)||(26942255-26942300)
chr7 (36-81)||(36723894-36723939)
chr7 (37-81)||(44945004-44945048)
[»] chr4 (5 HSPs)
chr4 (20-84)||(55204915-55204979)
chr4 (13-81)||(16204740-16204808)
chr4 (13-81)||(35187621-35187689)
chr4 (16-73)||(5232493-5232550)
chr4 (13-81)||(27993727-27993795)
[»] chr8 (2 HSPs)
chr8 (20-73)||(35959102-35959155)
chr8 (13-62)||(37044987-37045036)
[»] chr6 (4 HSPs)
chr6 (21-73)||(30590504-30590556)
chr6 (13-80)||(29968710-29968777)
chr6 (35-81)||(3418990-3419036)
chr6 (13-81)||(19292935-19293003)
[»] chr2 (2 HSPs)
chr2 (13-73)||(43317577-43317637)
chr2 (13-81)||(43822902-43822970)
[»] scaffold0648 (1 HSPs)
scaffold0648 (13-81)||(4582-4650)
[»] scaffold0274 (1 HSPs)
scaffold0274 (13-81)||(4052-4120)
[»] scaffold0001 (1 HSPs)
scaffold0001 (37-81)||(181481-181525)
[»] chr3 (6 HSPs)
chr3 (13-81)||(8541097-8541165)
chr3 (13-73)||(12518601-12518660)
chr3 (35-81)||(25644577-25644623)
chr3 (37-80)||(42641952-42641995)
chr3 (37-81)||(27813512-27813556)
chr3 (37-81)||(47278364-47278408)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 82 - 332
Target Start/End: Complemental strand, 3568974 - 3568721
Alignment:
Q  82 attcctgaatcttgatactttctagtaataaacacatcaccattcaagtggagtgcaaactctaggtattagagaaaattcaatagaagcaatttgaaag 181  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3568974 attcctgaatcctgatactttctagtaataaacacatcaccattcaagtggagtgcaaactctaggtattagagaagattcaatagaagcaatttgaaag 3568875  T
Q  182 taagaaga---caactactcgtgcataaaaataatcttacacccttaactcctaatctataaaacactttgtttactagtagtccagtcattaatgggaa 278  Q
    ||||||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3568874 taagaagaagacaactactcgtgcataaaaataatcttacacacttaactcctaatctataaaacactttgtttactagtaatccagtcattaatgggaa 3568775  T
Q  279 taaagtctaaacttaaatataaatatttagcaaacctcaaccaaacggtttaat 332  Q
    |||||||||| ||||||||||||||||||| || |||||||| |||||||||||    
T  3568774 taaagtctaagcttaaatataaatatttagtaagcctcaacctaacggtttaat 3568721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 96 - 332
Target Start/End: Complemental strand, 3118361 - 3118116
Alignment:
Q  96 atactttctagtaataaacacatcaccattcaagtggagtgcaaactctaggtattagagaaaattcaatagaagcaatttgaaagtaag---aagacaa 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||   |||||||    
T  3118361 atactttctagtaataaacacatcaccattcaagtggagtgcaaactctaggtattagagatgattcaatagaagcaatttgaaagtaagaagaagacaa 3118262  T
Q  193 ctactcgtgcataaaaataatcttacacccttaactcctaatctataaaacactttgtttac------tagtagtccagtcattaatgggaataaagtct 286  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||      ||||||| ||||||||||||||||||||||||    
T  3118261 ctactcgtgcataaaaatattcttacacacttaactcctaatctataaaacactttgtttactggtagtagtagttcagtcattaatgggaataaagtct 3118162  T
Q  287 aaacttaaatataaatatttagcaaacctcaaccaaacggtttaat 332  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||    
T  3118161 aaacttaaatataaatatttagcaagcctcaacctaacggtttaat 3118116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 3712568 - 3712508
Alignment:
Q  21 atttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  3712568 atttatagagaagttggggggtgcagtggcacctgtgggtctccaaggagatccgcccctg 3712508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 49915642 - 49915581
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatct-gggggtctccaaggagatc 73  Q
    ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  49915642 aatatggtatttatagagaagttggggggtgcagtggtacctggggggtctccaaggagatc 49915581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 52764448 - 52764395
Alignment:
Q  20 tatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatc 73  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  52764448 tatttatagagaagttggggggtgcagtggcatctgcaggtctccaaggagatc 52764395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 16632323 - 16632368
Alignment:
Q  36 ggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||    
T  16632323 ggggggtgcagtggcacctgggggtctctaaagagatctgcccctg 16632368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 46671520 - 46671589
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccctga 82  Q
    |||||| ||| |||| | || |||||||||||||||||| |||||||||||  | |||||| ||||||||    
T  46671520 aatatgttatatatataaaatttggggggtgcagtggcacctgggggtctctgaagagatccgcccctga 46671589  T

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Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 24535119 - 24535056
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgc 76  Q
    |||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  24535119 aatatgatatttatagagaagttggggggtgcagtggcatctgcaggtctccaaggagatctgc 24535056  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 4819659 - 4819606
Alignment:
Q  20 tatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatc 73  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  4819659 tatttatagagaagttggggggtgcagtggcatctgcaggtcttcaaggagatc 4819606  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 24442056 - 24442110
Alignment:
Q  20 tatttatagagaagttggggggt-gcagtggcatctgggggtctccaaggagatc 73  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||    
T  24442056 tatttatagagaagttggggggtggcagtggcatctgcaggtctccaaggagatc 24442110  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 17549194 - 17549145
Alignment:
Q  37 gggggtgcagtggcatctgggggtctccaaggagatctgcccctgattcc 86  Q
    |||||||||| |||| |||||||||||||| |||||| ||||||||||||    
T  17549194 gggggtgcagaggcacctgggggtctccaaagagatccgcccctgattcc 17549145  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 37022970 - 37023038
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||| |||||||| | | ||||||||||||||||||| |||||||||||  | |||||| |||||||    
T  37022970 aatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccgcccctg 37023038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 4428909 - 4428955
Alignment:
Q  35 tggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    ||||||||||||||||| || ||||||||||| |||||| |||||||    
T  4428909 tggggggtgcagtggcacctaggggtctccaaagagatccgcccctg 4428955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 43540979 - 43540949
Alignment:
Q  20 tatttatagagaagttggggggtgcagtggc 50  Q
    |||||||||||||||||||||||||||||||    
T  43540979 tatttatagagaagttggggggtgcagtggc 43540949  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 14028325 - 14028370
Alignment:
Q  35 tggggggtgcagtggcatctgggggtctccaaggagatctgcccct 80  Q
    ||||||||||||| ||| |||||||||||||| |||||| ||||||    
T  14028325 tggggggtgcagttgcacctgggggtctccaaagagatccgcccct 14028370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 31736925 - 31736969
Alignment:
Q  37 gggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    ||||||||||||||| |||||||||||||| |||||  |||||||    
T  31736925 gggggtgcagtggcacctgggggtctccaaagagattcgcccctg 31736969  T

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Target: scaffold0015 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 64487 - 64430
Alignment:
Q  20 tatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcc 77  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||    
T  64487 tatttatagagaagttgaggggtgcagtggcatctgcaggtctccaaggagatctgcc 64430  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 21524421 - 21524368
Alignment:
Q  20 tatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatc 73  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  21524421 tatttatagagaagttggggggtgcagtggcatctgcaggtctccaaggagatc 21524368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 1076094 - 1076140
Alignment:
Q  35 tggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||    
T  1076094 tggggggtgcagtggcatctgggggtctccaaagagatccgcccctg 1076140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 18774565 - 18774512
Alignment:
Q  20 tatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatc 73  Q
    |||||||||||||||| |||||||||||||||||||  |||||||||| |||||    
T  18774565 tatttatagagaagtttgggggtgcagtggcatctgcaggtctccaagcagatc 18774512  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 15234939 - 15234988
Alignment:
Q  37 gggggtgcagtggcatctgggggtctccaaggagatctgcccctgattcc 86  Q
    |||||||||| |||| |||||||||||||| |||||| ||||||||||||    
T  15234939 gggggtgcagaggcacctgggggtctccaaagagatccgcccctgattcc 15234988  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 49017058 - 49017105
Alignment:
Q  36 ggggggtgcagtggcatctgggggtctccaaggagatctgcccctgat 83  Q
    |||||||||||||||| ||||||||||| || |||||| |||||||||    
T  49017058 ggggggtgcagtggcacctgggggtctctaaagagatccgcccctgat 49017105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 26942300 - 26942255
Alignment:
Q  35 tggggggtgcagtggcatctgggggtctccaaggagatctgcccct 80  Q
    |||| |||||||||||| |||||||||||||| ||||||| |||||    
T  26942300 tgggaggtgcagtggcacctgggggtctccaaagagatctacccct 26942255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 36723939 - 36723894
Alignment:
Q  36 ggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||| | |||||||||||||||||||||| |||||| |||||||    
T  36723939 ggggggggaagtggcatctgggggtctccaaagagatccgcccctg 36723894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 44945048 - 44945004
Alignment:
Q  37 gggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    ||||||| ||||||| |||||||||||||| |||||| |||||||    
T  44945048 gggggtggagtggcacctgggggtctccaaagagatccgcccctg 44945004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 55204915 - 55204979
Alignment:
Q  20 tatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccctgatt 84  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||| ||||| ||| ||||||    
T  55204915 tatttatagagaagttggggggtgcagtggcatctgcaggtctccaagcagatccgccactgatt 55204979  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 16204808 - 16204740
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||| |||||||| | | ||||||||||||||||||| ||||||||||| || |||||| |||||||    
T  16204808 aatatgatatttatataaacgttggggggtgcagtggcacctgggggtctctaaagagatccgcccctg 16204740  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 35187621 - 35187689
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||| |||||||| | | || |||||||||||||||||||||||||||| || |||||| |||||||    
T  35187621 aatatgatatttatataaatgtcggggggtgcagtggcatctgggggtctctaaagagatccgcccctg 35187689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 5232493 - 5232550
Alignment:
Q  16 atggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatc 73  Q
    |||||||||||||| ||||| ||||||||||||||  ||  |||||||||||||||||    
T  5232493 atggtatttatagaaaagttagggggtgcagtggctcctatgggtctccaaggagatc 5232550  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 27993727 - 27993795
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||| |||||||| | |||||||||||||||||| ||  | |||||||| || |||||| |||||||    
T  27993727 aatatgatatttatataaaagttggggggtgcagtgacactttggggtctctaaagagatccgcccctg 27993795  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 35959102 - 35959155
Alignment:
Q  20 tatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatc 73  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  35959102 tatttatagagaagttggggggtgcagtggcatctgcaggtctccaagcagatc 35959155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 37045036 - 37044987
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtct 62  Q
    |||||| |||||||| | | ||||||||||||||||||| ||||||||||    
T  37045036 aatatgctatttatataaatgttggggggtgcagtggcacctgggggtct 37044987  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 30590504 - 30590556
Alignment:
Q  21 atttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatc 73  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  30590504 atttatagagaagttggggggtgcagtggcacctgtggatctccaaggagatc 30590556  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 29968710 - 29968777
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccct 80  Q
    |||||| |||||||| | ||||||||||||||||||||| ||||||||||| || |||||| ||||||    
T  29968710 aatatgatatttatataaaagttggggggtgcagtggcacctgggggtctctaaagagatccgcccct 29968777  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 3419036 - 3418990
Alignment:
Q  35 tggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||    
T  3419036 tggggggtgcagtggcatctgggggtctccaaagagatccgcccctg 3418990  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 19292935 - 19293003
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||| |||||||| | | ||||||||||||||||||| |||||||||||  | |||||| |||||||    
T  19292935 aatatgctatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccgcccctg 19293003  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 43317637 - 43317577
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatc 73  Q
    |||||| || ||||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  43317637 aatatgctagttatagagaagttggggggtgcaatggcacctgcgggtctccaaggagatc 43317577  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 43822902 - 43822970
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||| ||| |||| | || |||||||||||||||||| |||||||||||  | |||||| |||||||    
T  43822902 aatatgatatatatataaaatttggggggtgcagtggcacctgggggtctctgaagagatccgcccctg 43822970  T

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Target: scaffold0648 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 4582 - 4650
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||| |||||||| | | ||||||||||||||||||| ||||||||||| || |||||| |||||||    
T  4582 aatatgatatttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcccctg 4650  T

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Target: scaffold0274 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 4052 - 4120
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||| |||||||| | | ||||||||||||||||||| ||||||||||| || |||||| |||||||    
T  4052 aatatgatatttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcccctg 4120  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 181525 - 181481
Alignment:
Q  37 gggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||||||||||||||||||||||||||| |||||| |||||||    
T  181525 gggggtgcagtggcatctgggggtctccaaagagatccgcccctg 181481  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 8541165 - 8541097
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    |||||| |||||||| | | ||||||||||||||||||| ||||||||||| || |||||| |||||||    
T  8541165 aatatgatatttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcccctg 8541097  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 12518601 - 12518660
Alignment:
Q  13 aatatggtatttatagagaagttggggggtgcagtggcatctgggggtctccaaggagatc 73  Q
    |||||| |||||||||||||||||||||||||||||||| ||   ||||||||||||||||    
T  12518601 aatatgctatttatagagaagttggggggtgcagtggcacct-atggtctccaaggagatc 12518660  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 25644623 - 25644577
Alignment:
Q  35 tggggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  25644623 tggggggtgcaatggcatctgagggtctccaaagagatctgcccctg 25644577  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 42641952 - 42641995
Alignment:
Q  37 gggggtgcagtggcatctgggggtctccaaggagatctgcccct 80  Q
    ||||||||||||||| |||||||||||||| |||||| ||||||    
T  42641952 gggggtgcagtggcacctgggggtctccaaagagatccgcccct 42641995  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 27813556 - 27813512
Alignment:
Q  37 gggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    ||||||||||||||| ||||||||||| || |||||| |||||||    
T  27813556 gggggtgcagtggcacctgggggtctctaaagagatccgcccctg 27813512  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 47278364 - 47278408
Alignment:
Q  37 gggggtgcagtggcatctgggggtctccaaggagatctgcccctg 81  Q
    ||||||||||||||| ||||||||||| || |||||| |||||||    
T  47278364 gggggtgcagtggcacctgggggtctctaaagagatccgcccctg 47278408  T

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