View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_41 (Length: 314)
Name: NF19860_low_41
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 39 - 300
Target Start/End: Complemental strand, 47586029 - 47585768
Alignment:
| Q |
39 |
cacatcacctaaaacttcagtattcgaatggcaacacttcaattacatggtggatcaacttctacggatgccacagaattttgaaaaattagtggagcac |
138 |
Q |
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| T |
47586029 |
cacatcacctaaaacttcagtattcgaatggcaacacttcaattaaatggtggatcaacttctacggatgccacagaattttgaaaaattagtggagcac |
47585930 |
T |
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| Q |
139 |
actcaaatatgtaaatttcacaaaagcatacaagtctatatacaaaaaattctcacagttcatgcatgtaataagctaacaacacttcatttacaacatc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47585929 |
actcaaatatgtaaatttcacaaaagcatacaagtctatatacaaaaaattctcacagttcatgcatgtaataagctaacaacacttcatttacaacatc |
47585830 |
T |
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| Q |
239 |
taaaatgccgcctcagggaatgttcttaaattattgttccaaagataatatttgaaggattt |
300 |
Q |
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| T |
47585829 |
taaaatgccgcctcagggaatgttcttaaattattgttccaaagataatatttgaaggattt |
47585768 |
T |
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