View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19860_low_42 (Length: 311)

Name: NF19860_low_42
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19860_low_42
NF19860_low_42
[»] chr3 (1 HSPs)
chr3 (18-311)||(40834370-40834660)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 40834370 - 40834660
Alignment:
Q  18 aaatggtaatggattatgatgatagtagtagagtagtagttagtgggtttatataggaaaaggaatcattaataacaagtgtaaggttaaacacatatga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40834370 aaatggtaatggattatgatgatagtagtagagtagtagttagtgggtttatataggaaaaggaatcattaataacaagtgtaaggttaaacacatatga 40834469  T
Q  118 tcataataataataatgatactgttatatgaatatgatcttatccgttgaatttgatgctgagagatgtttcctttcttagttttccaacccaaatggat 217  Q
    ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40834470 tcataa---taataatgatactgttatatgaatatgatcttatccgttgaatttgatgctgagagatgtttcctttcttagttttccaacccaaatggat 40834566  T
Q  218 tcattcagatgctcatcctattgtcaattgtcatacatacacgtacataactcacgggatgtgctacagnnnnnnntgttgattaacataacat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||    
T  40834567 tcattcagatgctcatcctattgtcaattgtcatacatacacgtacgtaactcacgggatgtgctacagaaaaaaatgttgattaacataacat 40834660  T

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