View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_43 (Length: 304)
Name: NF19860_low_43
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 31164166 - 31164443
Alignment:
| Q |
18 |
gccttctgggtggaggttattgcaacattcatcatcatgtttttggttactgctttgacatctgaacatcaatcagtaagtactaattaaggaagaaagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31164166 |
gccttctgggtggaggttattgcaacattcatcatcatgtttttggttactgctttgacatctgaacatcaatcagtaagtactaattaaggaagaaagt |
31164265 |
T |
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| Q |
118 |
tacatatttatatatgttccttaataattagcaatgattccacnnnnnnngctagctaaaagttaaacatattttgcaggtgggacatttatctggtttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31164266 |
tacatatttatatatgttccttaataattagcaatgattccactttttttgctagcttaaagttaaacatattttgcaggtgggacatttatctggtttt |
31164365 |
T |
|
| Q |
218 |
gttgctggaattgcaattgggcttgctgtactaattacagggta-cccattcacatatatagtataacacagaaattt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31164366 |
gttgctggaattgcaattgggcttgctgtactaattacagggtaccccattcacatatatagtataacacagaaattt |
31164443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 11157686 - 11157798
Alignment:
| Q |
20 |
cttctgggtggaggttattgcaacattcatcatcatgtttttggttactgctttgacatctgaacatcaatcagtaagtactaattaaggaagaaagtta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||| |||||||||||| |||||||||||||| |
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| T |
11157686 |
cttctgggtggaggttattgcaacattcatcatcatgtttttggatatagctttgacatctgaacctcaacaggtaagtactaatcaaggaagaaagtta |
11157785 |
T |
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| Q |
120 |
catatttatatat |
132 |
Q |
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| T |
11157786 |
catatttatatat |
11157798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 36573448 - 36573332
Alignment:
| Q |
15 |
tcagccttctgggtggaggttattgcaacattcatcatcatgtttttggttactgctttgacatctgaacatcaatcagtaagtactaattaaggaagaa |
114 |
Q |
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|||||||| ||||||||||| ||||||| |||||||||| |||||||||||| |||||| ||| ||||||||||||||||||||| |||||||| ||| |
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| T |
36573448 |
tcagccttatgggtggaggtaattgcaatattcatcatcgcgtttttggttacaactttgatatcggaacatcaatcagtaagtacttattaaggaggaa |
36573349 |
T |
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| Q |
115 |
agttacatatttatata |
131 |
Q |
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||||||||||||||||| |
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| T |
36573348 |
agttacatatttatata |
36573332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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