View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19860_low_46 (Length: 288)

Name: NF19860_low_46
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19860_low_46
NF19860_low_46
[»] chr8 (1 HSPs)
chr8 (1-288)||(34867543-34867833)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 34867543 - 34867833
Alignment:
Q  1 ctgcccaacgaccttagatattgaaacaaaatcttcattcagaataagataaagtgaaagcaataactagtgagtgaatcaggtgtgtgattgagtggta 100  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34867543 ctgcccaacgacctttgatagcgaaacaaaatcttcattcagaataagataaagtgaaagcaataactagtgagtgaatcaggtgtgtgattgagtggta 34867642  T
Q  101 ggggatgtttgtcaaatgttatgattgcatcaacctagtccgctaggttaacattatttcaaaatgatcacgctataattgtaaattattatccaggttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34867643 ggggatgtttgtcaaatgttatgattgcatcaacctagtccgctaggttaacattatttcaaaatgatcacgctataattgtaaattattatccaggttt 34867742  T
Q  201 catccctccatcaatatttacaaggactagacat---taagttaaaaacatcagagatgatgtatttgaaattaagtgatcaagtctgata 288  Q
    ||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  34867743 catccctccatcaatatttacaaggactagacattaataagttaaaatcatcagagatgatgtatttgaaattaagtgatcatgtctgata 34867833  T

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